PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_027210_mzdq.t1
Common NameSOVF_027210
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family CO-like
Protein Properties Length: 373aa    MW: 40520.3 Da    PI: 6.185
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_027210_mzdq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.13.1e-07941436
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                       + C+ +++  ++ fC+ +  +lC +C  + H  
  Sp_027210_mzdq.t1  9 KLCDSCKSATATVFCRADTAYLCISCDAKVHAA 41
                       68*************************999954 PP
2zf-B_box261.9e-085196342
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                        ++C+ +e+ ++++ C+ +  +lC +C   +H+       H++vpl
  Sp_027210_mzdq.t1 51 VWVCEVCEHAPASITCKADAAHLCVTCDRDIHSAnplarrHDRVPL 96
                       689*****************************66899999999986 PP
3CCT70.25.1e-24303346144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Sp_027210_mzdq.t1 303 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 346
                        9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.1E-11653IPR000315B-box-type zinc finger
PROSITE profilePS5011910.58653IPR000315B-box-type zinc finger
PfamPF006433.3E-5948IPR000315B-box-type zinc finger
CDDcd000216.64E-81053No hitNo description
PROSITE profilePS5011910.7794996IPR000315B-box-type zinc finger
PfamPF006432.4E-65196IPR000315B-box-type zinc finger
CDDcd000215.57E-85296No hitNo description
SMARTSM003361.1E-85496IPR000315B-box-type zinc finger
PROSITE profilePS5101716.787303345IPR010402CCT domain
PfamPF062035.7E-18303345IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MGVGLMAAKL CDSCKSATAT VFCRADTAYL CISCDAKVHA ANKLASRHAR VWVCEVCEHA  60
PASITCKADA AHLCVTCDRD IHSANPLARR HDRVPLTPFY DPLTPTPPPS ENNNSLPTAA  120
ATAAAKSAAI NKLFGDDYYS DADEAEAASW LLPNPNKQDE PKSIDYLFSG AADEADAIDP  180
YLDLDFGAEP KPDPDLSADG VVPDPDQKGS LQHPQLQHQA SMFSLSSFHH HDATNPHFDS  240
YENPSAACKP FSLSSFSNQP SLSHSVSSSS LDYGVVPDAS VMADVASTGF DKQQQMKMIG  300
MDREARVLRY REKRKNRKFE KTIRYASRKA YAETRPRIKG RFAKRTDIEV EVSAAAVDGL  360
FASDPGYGVV PSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021850426.10.0zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T91e-93COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A0K9RUG60.0A0A0K9RUG6_SPIOL; Uncharacterized protein
STRINGXP_010692981.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.12e-78CONSTANS-like 4