PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_026220_mguw.t1
Common NameSOVF_026220
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 339aa    MW: 38530.8 Da    PI: 4.3873
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_026220_mguw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  Sp_026220_mguw.t1 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLQRCSKSCRLRWTNYL 61
                       79********************************************97 PP
2Myb_DNA-binding45.71.5e-1467112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++T+ E+  ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Sp_026220_mguw.t1  67 RGNFTPHEEGMIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 112
                        89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-25564IPR009057Homeodomain-like
PROSITE profilePS5129425.952965IPR017930Myb domain
SuperFamilySSF466897.99E-3111108IPR009057Homeodomain-like
SMARTSM007178.3E-141363IPR001005SANT/Myb domain
PfamPF002493.2E-161461IPR001005SANT/Myb domain
CDDcd001675.81E-111661No hitNo description
Gene3DG3DSA:1.10.10.607.9E-2565117IPR009057Homeodomain-like
SMARTSM007173.5E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129418.7566116IPR017930Myb domain
PfamPF002495.9E-1367112IPR001005SANT/Myb domain
CDDcd001676.42E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGRPPCCDKD GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLQRCS KSCRLRWTNY  60
LRPGIKRGNF TPHEEGMIIH LQALLGNKWA AIASYLPQRT DNDIKNYWNT HLKKKLKRFQ  120
SSFPQEPPAT TSFSSSLTKC INDNDNDDNN DNYHHHYIHK NDNNPSVDVD HNMAVTPPPA  180
PPLPQPPSSS STCYASSTEN ISRLLESWMK CSPLSKPKLE VGNNYHNDDD DNNNNNDNNN  240
DDDNDNDNDE EDHFETMLSF HNNLNDNDND NDNDNDKVVD MITTITATGE DSNEGVKDYI  300
DDDDEGDNPP LTFLEKWLLD ESTTSRQVAQ EILQLPSIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-24141164105C-Myb DNA-Binding Domain
1msf_C7e-24141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021854519.10.0myb-related protein 306
SwissprotB3VTV71e-105MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A0K9RWR60.0A0A0K9RWR6_SPIOL; Uncharacterized protein
STRINGXP_010677864.11e-130(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.12e-83myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]