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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_026020_gcng.t1 | ||||||||
Common Name | SOVF_026020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 27748.5 Da PI: 8.6038 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.9 | 3.7e-13 | 51 | 96 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h ++E+rRRdriN +++Lr+l+Pk+ +K++Ka+ Le++ve +k+L Sp_026020_gcng.t1 51 NHRQAEKRRRDRINGQLARLRRLIPKS-----EKMDKAALLERVVEQVKDL 96 799***********************8.....8*************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.027 | 47 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.6E-13 | 50 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.16E-12 | 50 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.1E-11 | 51 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.04E-10 | 51 | 99 | No hit | No description |
SMART | SM00353 | 3.2E-10 | 53 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00167 | 149 | 200 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MPHHFNATNT TSSSMHLQEL PANCYALEFQ EPFEGFAEFE DKASAADSSH NHRQAEKRRR 60 DRINGQLARL RRLIPKSEKM DKAALLERVV EQVKDLKRKA SEISKIFTIP SEIDDITIEC 120 HRKENHPNNN NNNNNNNNSN SNIMFMKATL CCEDRPDLIP ELIRELKDLN LTVIGADIGC 180 LGGRMKSILL LYYKLDSNND GVVCNVSAIK QSLMGVLTRI ISWSSASTSS FRVTSKRQRF 240 FFSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021859517.1 | 0.0 | transcription factor bHLH51 isoform X2 | ||||
TrEMBL | A0A0K9RWK7 | 0.0 | A0A0K9RWK7_SPIOL; Uncharacterized protein | ||||
STRING | XP_010689462.1 | 1e-111 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 5e-40 | bHLH family protein |