PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sp_025870_qihe.t1

Common Name

SOVF_025870

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Protein Properties

Length: 229aa MW: 25865.7 Da PI: 9.6459

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_025870_qihe.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.2	2.5e-12	134	209	4	85
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 ++ps+v+ +l lp f+++ + +++ +++l de+ ++ v + rk++ l++GWk+F++ ++L +gD vvF++ Sp_025870_qihe.t1 134 PMLPSHVTGGFWLGLPSWFCRKSL-P-RNDGMVRLVDEDEIEYPVVYLARKCG----LSGGWKGFAECHQLVDGDAVVFQVL 209 6899**************8883.3.34559***********555555....********************954 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.73E-17	127	221	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.9E-13	128	220	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.12E-18	129	206	No hit	No description
SMART	SM01019	2.0E-10	131	222	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.714	131	222	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-10	134	210	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MGIGTTSYEK SREKRVEENK KRLDDLNLIH LSQALKNLSP KPTPMKKASK PRIMDKQIIQ 60 VRRSPRVANN PAPVYAEISL PRFSSPRKNY GVVKARDFSN RVIASDDVRE YTIEEAEKLN 120 AKLEEEGFPT LVRPMLPSHV TGGFWLGLPS WFCRKSLPRN DGMVRLVDED EIEYPVVYLA 180 RKCGLSGGWK GFAECHQLVD GDAVVFQVLS HSIIKAYIIR GSSYDSGTD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021836085.1	1e-169	B3 domain-containing protein Os06g0194400-like
TrEMBL	A0A0K9RV24	1e-169	A0A0K9RV24_SPIOL; Uncharacterized protein
STRING	XP_010667517.1	1e-131	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	5e-56	B3 family protein