PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

HB-other

Protein Properties

Length: 1841aa MW: 204931 Da PI: 4.8464

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_025650_iaes.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.2	2.5e-17	30	86	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + kR t++qle+Le+ ++ yp ++ r+eL+ +lgLt+rq ++WF+ rR k++k Sp_025650_iaes.t1 30 KTKRKMKTASQLEVLEKTYQVATYPAEALRAELSVQLGLTDRQLQMWFCHRRLKDRK 86 6799***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-17	7	88	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.84E-16	17	88	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.18	27	87	IPR001356	Homeobox domain
SMART	SM00389	6.0E-16	29	91	IPR001356	Homeobox domain
CDD	cd00086	1.32E-12	30	88	No hit	No description
Pfam	PF00046	5.8E-15	30	86	IPR001356	Homeobox domain
PROSITE profile	PS50827	17.715	588	647	IPR018501	DDT domain
SMART	SM00571	3.6E-23	588	647	IPR018501	DDT domain
Pfam	PF02791	3.9E-18	589	644	IPR018501	DDT domain
Pfam	PF05066	1.7E-14	770	838	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	2.0E-6	996	1040	IPR028942	WHIM1 domain
Pfam	PF15613	1.6E-10	1181	1252	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1841 aa Download sequence Send to blast
MEGGSCSDGE KKPPESGGGG GGGSGGGEPK TKRKMKTASQ LEVLEKTYQV ATYPAEALRA 60 ELSVQLGLTD RQLQMWFCHR RLKDRKPQQG GGGGGGGGGG GSGKRSKKRE ASPAAAAATG 120 GPNVAVAPLL PPAPAPVGLR DEMLGAELGN EHGSGSGSGS SPYGHMDPRR GYVGRPGVAV 180 PRISGHGRYY EPSQSVAELR AIAFVEAQLG EPLRDDGPAL GMEFDPLPPG AFGAPITTTT 240 APQKPTGRTY EYDRADAKPV KGSNRAPHEY QFLPEQPTVR SESYERVAQS HYYGSPSDGP 300 GTKTPPLSSG RSYIHGYEEV PVVYGVPNQV SSLNLMSQGK VGSLMPSTSG DYETIARKSP 360 YMNMGMESPF SAHPTSGLDN ALISSERRAT QEEDAGRLER KRKNEEARVA KEIEAHEKKM 420 RKELERQDIL RKKREEQLRK DMERQDRERK KEEERLLREK QREEERYQRE QKREMERREK 480 FLLKETIRVE KMKQKEELRR EREAARQKAA NDRAVARRLA KESTELIEDE RLELMEIAAS 540 RKSLTSILSL DSETLQNLDS FREMLRVFPP KSVQLKKPFA TRPWMGSEEN VGNLLMVWRF 600 LVTFADVLGL WPFTLDEFVQ AFHDYDPRLL GEIHVSLLRT IIKDIEDVAR TPSTGLGVNQ 660 NSVANPVGGH PQIVEGAYAW GFDIRSWQCN LNPLTWPEVL RQLALSAGFG PKLKKRNTEQ 720 AYSREEYEGN DGIDIISNLR TGAAVESAVA IMRERGYSNP RRSRHRLTPG TVKFAAFHVL 780 SLEGGNGLNI LEVADRIQKS GLRDLTTSKT PEASIAAALS RDTKLFERTA PSTYCVRSPF 840 RKDPADGEAI LSSAREKIRE FKIGFVDGVE ADVDGMEADD VEKDEDSESD IAEDPEIDDL 900 GTELTPNNDV NPLYDGNSSV PKVESDNGSR DLHSHVVDKT PNGLADAGNV LSSAHLESFK 960 ELNDNGCFAE ESMDVGGICQ ETNSTDHEDT DIDESCPGEP WVQGLMEGEY SNLSVEERLN 1020 SLVALLGVAT EGNTIRVVLE ERLEAATALK KQMWAEAQLD KRRLKEEYLL KTPYAAFVPN 1080 KTESNTILSA PDSRQSPMLA LDENTNDPMV NLAIQQKPFH EAHNDYNLHS DLLSDKNLTT 1140 PNVAAGSDNL ALQQSAYAAE RCRAQMKSYI GHKAEEMYVY RSLPLGQDRR RNRYWQFVAS 1200 ASCNDPGAGR IFVELHNGSW RLIDSEVGFD ALLASLDLRG VRECHLHALL RKVEPLFKES 1260 VRKQQDRPNS IKAETSELHF NPESSGGTDS PISTVCASNS EIPEPSSSFK IESGRNNLEV 1320 KNAFKRYTDF EEWIWRECFS SSVLCGTKYG KKRCMELVCK CDSCHDLYFF EDSHCPTCHK 1380 TYSAYDKSFN FSDHIAQCQE IKVNLEWNLQ HLEYPPRIRL IKAFLALVEV CIPPEAFQPI 1440 WSDTYRKSWG MKLHMSSCAE DLLQALSLLE GVIKRDFLLS NFQTTGELLA SGNGIGYGVN 1500 DASNFGAVTT LPWIPQTTSA VALRLMELDS AISYLPDQKA KDTEPRHFLK LPSKYTVVRN 1560 VQEDEFAGPT RQQEDAWFDR GSDVGFAAIR GSRGRGRGRS RGGRSQRRGG VGEVLGGWKG 1620 RNSRGKGGRK RGRRSVRKRQ KAVKKTTAAA AAVADRSLPE PIIFDKSPPG FSGRDVWDHE 1680 ESRQMMMQVD EEEVDVNDDS NSEYDDEFNG QASGDEYDDD PMAVDDYAAV YNGRPPHLSD 1740 YNNNVDDGDE EDDDDQDEEE VGDYEQGADE DDDVDVDVDV DVDGAEYEQA ELEEDVGGYL 1800 NADSDDEIEV NRDDDRMRMR DDHRDQDNTS ESDASSDYSS D

Sequence ? help Back to Top

Protein Sequence Length: 1841 aa Download sequence Send to blast

MEGGSCSDGE KKPPESGGGG GGGSGGGEPK TKRKMKTASQ LEVLEKTYQV ATYPAEALRA  60
ELSVQLGLTD RQLQMWFCHR RLKDRKPQQG GGGGGGGGGG GSGKRSKKRE ASPAAAAATG  120
GPNVAVAPLL PPAPAPVGLR DEMLGAELGN EHGSGSGSGS SPYGHMDPRR GYVGRPGVAV  180
PRISGHGRYY EPSQSVAELR AIAFVEAQLG EPLRDDGPAL GMEFDPLPPG AFGAPITTTT  240
APQKPTGRTY EYDRADAKPV KGSNRAPHEY QFLPEQPTVR SESYERVAQS HYYGSPSDGP  300
GTKTPPLSSG RSYIHGYEEV PVVYGVPNQV SSLNLMSQGK VGSLMPSTSG DYETIARKSP  360
YMNMGMESPF SAHPTSGLDN ALISSERRAT QEEDAGRLER KRKNEEARVA KEIEAHEKKM  420
RKELERQDIL RKKREEQLRK DMERQDRERK KEEERLLREK QREEERYQRE QKREMERREK  480
FLLKETIRVE KMKQKEELRR EREAARQKAA NDRAVARRLA KESTELIEDE RLELMEIAAS  540
RKSLTSILSL DSETLQNLDS FREMLRVFPP KSVQLKKPFA TRPWMGSEEN VGNLLMVWRF  600
LVTFADVLGL WPFTLDEFVQ AFHDYDPRLL GEIHVSLLRT IIKDIEDVAR TPSTGLGVNQ  660
NSVANPVGGH PQIVEGAYAW GFDIRSWQCN LNPLTWPEVL RQLALSAGFG PKLKKRNTEQ  720
AYSREEYEGN DGIDIISNLR TGAAVESAVA IMRERGYSNP RRSRHRLTPG TVKFAAFHVL  780
SLEGGNGLNI LEVADRIQKS GLRDLTTSKT PEASIAAALS RDTKLFERTA PSTYCVRSPF  840
RKDPADGEAI LSSAREKIRE FKIGFVDGVE ADVDGMEADD VEKDEDSESD IAEDPEIDDL  900
GTELTPNNDV NPLYDGNSSV PKVESDNGSR DLHSHVVDKT PNGLADAGNV LSSAHLESFK  960
ELNDNGCFAE ESMDVGGICQ ETNSTDHEDT DIDESCPGEP WVQGLMEGEY SNLSVEERLN  1020
SLVALLGVAT EGNTIRVVLE ERLEAATALK KQMWAEAQLD KRRLKEEYLL KTPYAAFVPN  1080
KTESNTILSA PDSRQSPMLA LDENTNDPMV NLAIQQKPFH EAHNDYNLHS DLLSDKNLTT  1140
PNVAAGSDNL ALQQSAYAAE RCRAQMKSYI GHKAEEMYVY RSLPLGQDRR RNRYWQFVAS  1200
ASCNDPGAGR IFVELHNGSW RLIDSEVGFD ALLASLDLRG VRECHLHALL RKVEPLFKES  1260
VRKQQDRPNS IKAETSELHF NPESSGGTDS PISTVCASNS EIPEPSSSFK IESGRNNLEV  1320
KNAFKRYTDF EEWIWRECFS SSVLCGTKYG KKRCMELVCK CDSCHDLYFF EDSHCPTCHK  1380
TYSAYDKSFN FSDHIAQCQE IKVNLEWNLQ HLEYPPRIRL IKAFLALVEV CIPPEAFQPI  1440
WSDTYRKSWG MKLHMSSCAE DLLQALSLLE GVIKRDFLLS NFQTTGELLA SGNGIGYGVN  1500
DASNFGAVTT LPWIPQTTSA VALRLMELDS AISYLPDQKA KDTEPRHFLK LPSKYTVVRN  1560
VQEDEFAGPT RQQEDAWFDR GSDVGFAAIR GSRGRGRGRS RGGRSQRRGG VGEVLGGWKG  1620
RNSRGKGGRK RGRRSVRKRQ KAVKKTTAAA AAVADRSLPE PIIFDKSPPG FSGRDVWDHE  1680
ESRQMMMQVD EEEVDVNDDS NSEYDDEFNG QASGDEYDDD PMAVDDYAAV YNGRPPHLSD  1740
YNNNVDDGDE EDDDDQDEEE VGDYEQGADE DDDVDVDVDV DVDGAEYEQA ELEEDVGGYL  1800
NADSDDEIEV NRDDDRMRMR DDHRDQDNTS ESDASSDYSS D

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021860740.1	0.0	homeobox-DDT domain protein RLT2
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A0K9RUY6	0.0	A0A0K9RUY6_SPIOL; Uncharacterized protein
STRING	XP_010689786.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator