PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_025530_mcpg.t1
Common NameSOVF_025530
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family M-type_MADS
Protein Properties Length: 403aa    MW: 43839.5 Da    PI: 6.802
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_025530_mcpg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.85e-222270149
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       kr e +snr vtfskRr g++KKA+EL++LC+ae+a+i+fs+  k++ +
  Sp_025530_mcpg.t1 22 KRMEKESNRLVTFSKRRSGLFKKASELCTLCGAEAAIIVFSPGRKVFSF 70
                       68999*************************************9999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.7681474IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-301473IPR002100Transcription factor, MADS-box
CDDcd002657.33E-341583No hitNo description
SuperFamilySSF554551.27E-261585IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-181636IPR002100Transcription factor, MADS-box
PfamPF003191.4E-232370IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-183651IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-185172IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MADNNIEQVE KKNKGRQRVE MKRMEKESNR LVTFSKRRSG LFKKASELCT LCGAEAAIIV  60
FSPGRKVFSF GHPSVDTVIN RYLMADSFFR GAIYNNGESS ENHDPTLMSS YMNLTMINNQ  120
IELEKKESKE LFVSRKTRGE EYKWAAPIGE LGLEDLKKFQ VPLDELKSEA YKLYLKFAKD  180
GTKTGSAVEP AYNFPPEMVE GQNPIPSHFG VHPHLMVPTN LVEGPNNYDH SQMMMIQPPM  240
GGFGDSSFTM GSNGISMNHH FNTNGSSSAS GNSGLSLPNP MGLGFPASNF FPSFQGENNP  300
MEGGQFIGHP PMPPLNMQGM NPIPSHFQTF TPLLMGGNGP NAPGSAFLME GNGPNAPAPT  360
FLMEGNGPNG PAPTFPVGGN GPNAPAPAYN HQGGMGFGNE RLH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863605.10.0floral homeotic protein AGAMOUS-like
TrEMBLA0A0K9RV510.0A0A0K9RV51_SPIOL; Uncharacterized protein
STRINGXP_010690726.11e-102(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-43AGAMOUS-like 62