PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

MIKC_MADS

Protein Properties

Length: 218aa MW: 24932.4 Da PI: 6.1685

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_025490_kdjm.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	83.8	1e-26	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ri+n + rqvtf+kRr+g++KKA+ELS+LCdaev +iifsstgk+ye Sp_025490_kdjm.t1 9 ERIDNLTSRQVTFTKRRKGLFKKAKELSILCDAEVGIIIFSSTGKVYEI 57 69*********************************************95 PP
2	K-box	72.9	9.3e-25	75	169	6	98
K-box 6 gks..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 ++ + +++a+ ++ e++ L++++e L+++ R+llGe+L++Ls+++L+ Le qLe + ++iR +K+e+++++i+el k e ++++en++L+ Sp_025490_kdjm.t1 75 ENQvlNPTSEAQLWKVEAEGLRQQLEDLRKNSRQLLGEELSELSIEHLETLEAQLEMGTRSIRLRKEEIFKNKIQELNKTEIMVHQENMELH 166 44445778999********************************************************************************* PP K-box 96 kkl 98 kk+ Sp_025490_kdjm.t1 167 KKI 169 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	30.011	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.5E-38	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-30	1	80	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.36E-37	2	74	No hit	No description
PRINTS	PR00404	1.2E-26	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.5E-24	10	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-26	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	1.6E-22	82	169	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	13.761	85	175	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008134	Molecular Function	transcription factor binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MGRGKISIER IDNLTSRQVT FTKRRKGLFK KAKELSILCD AEVGIIIFSS TGKVYEIASH 60 CMQSLLERYY KANEENQVLN PTSEAQLWKV EAEGLRQQLE DLRKNSRQLL GEELSELSIE 120 HLETLEAQLE MGTRSIRLRK EEIFKNKIQE LNKTEIMVHQ ENMELHKKIN LMRQEMVELQ 180 KKNEVSGGQG KDDQEGGGAS SSAASAYDTY DPIELKLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	6e-20	1	77	1	77	MEF2C
5f28_B	6e-20	1	77	1	77	MEF2C
5f28_C	6e-20	1	77	1	77	MEF2C
5f28_D	6e-20	1	77	1	77	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021717234.1	1e-145	MADS-box transcription factor 23-like isoform X2
Refseq	XP_021776241.1	1e-145	MADS-box transcription factor 23-like isoform X2
Swissprot	Q6EP49	2e-72	MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBL	A0A0K9RUZ7	1e-157	A0A0K9RUZ7_SPIOL; Uncharacterized protein
STRING	XP_010691448.1	1e-135	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	5e-61	AGAMOUS-like 21

Publications ? help Back to Top
Puig J, et al. Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice. Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70 [PMID:23466806] Yu C, et al. The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice. PLoS ONE, 2014. 9(8): p. e105597 [PMID:25140876]