PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_024910_nchh.t1
Common NameSOVF_024910
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 332aa    MW: 34483.6 Da    PI: 6.6789
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_024910_nchh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.7e-10181225554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  Sp_024910_nchh.t1 181 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 225
                        99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.71E-11174230No hitNo description
SuperFamilySSF474591.19E-15174235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.526176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15178236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-7181225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-12182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MANNQPHHHH HEGLGDEFFE QILSVSGYNT GGGSDGGGYV GGGSGGGDGS SILLGLGPGD  60
GSGHGGVNVG LGIGGFRGGM GLGLPLGLNL DHGGSSTHGG GDGGNASSSS RINESDSMHL  120
TNLFPAFGQL QHQSLRPAPP SIQVHQTFQG HSAPGPAPPM SHPPAIRPRV RARRGQATDP  180
HSIAERLRRE RIAERMKALQ ELVPSCNKTD RAAMLDEIVD YVKFLRLQVK VLSMSRLGGA  240
GAVAQLVADV PPSSIEGEAV DGAQAAWEKW SSDGTEQQVA KLMEQDIGAA MQFLQSKALC  300
IMPVSLASAI FRSHPPPPDT PSMIKPEANP PP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185190RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021835222.10.0transcription factor UNE12-like
SwissprotO227687e-85UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0K9RX000.0A0A0K9RX00_SPIOL; Uncharacterized protein
STRINGXP_010674832.11e-169(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.34e-56bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]