PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Basic Information? help Back to Top

TF ID

Sp_024820_ycrm.t1

Common Name

SOVF_024820

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

LBD

Protein Properties

Length: 241aa MW: 27104.4 Da PI: 4.0524

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_024820_ycrm.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	31.6	4.6e-10	1	41	58	98
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 mss++y+A++r r Pv G+v+vi+ l++q++q ++el +++ Sp_024820_ycrm.t1 1 MSSIIYQANVRDRFPVFGCVEVIQLLKNQIHQCEQELLSVH 41 89*********************************998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	2.2E-7	1	40	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	8.55	1	44	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MSSIIYQANV RDRFPVFGCV EVIQLLKNQI HQCEQELLSV HSILNLYRNQ HEQQQPVSSN 60 GVPFTDFNAA SQLQLGMAPP INNDLSCYPL NTLVHEQQYN SDNMVPVSQN HSYSSSSSPY 120 NSGYFDVKET VLNSMWIQQQ GGDDNNNSSD NDNGNVMPIQ SQLVVTSEST ANQQDAFQDY 180 NDMHPYFDTV DDRQSYIDSK ETYDSSPESS AKDITQFTVT EHVGENELKT AAAYFSLTSV 240 N

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021866221.1	1e-177	LOB domain-containing protein 27-like
TrEMBL	A0A0K9RV76	1e-177	A0A0K9RV76_SPIOL; Uncharacterized protein
STRING	XP_010678608.1	1e-100	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	2e-08	LOB domain-containing protein 27