PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_024760_amgu.t1
Common NameSOVF_024760
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family G2-like
Protein Properties Length: 419aa    MW: 47175.5 Da    PI: 6.2527
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_024760_amgu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.51.1e-31245299155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k+r+rWt+eLHe+Fve+v+ LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  Sp_024760_amgu.t1 245 KTRIRWTTELHEKFVECVNLLGGADKATPKAILKLMNSDGLTIFHVKSHLQKYRI 299
                        68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.402242302IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-28243300IPR009057Homeodomain-like
SuperFamilySSF466895.91E-18243299IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-23245300IPR006447Myb domain, plants
PfamPF002491.9E-9249298IPR001005SANT/Myb domain
PfamPF143791.1E-20329376IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MSNQKIDFRE QVQQSNGVIN DCMVDLGSRD SQFISVREPW NNMGGCMGGE SQPQNVLPDN  60
LSNGRFGSPV PGFSTAERYV GLPYDHRISS PTFSSQCSKN YDLEYRSFPC SAEGFSAQLG  120
EQDATDLHSR NTVETAAKSL LYGDQSQFYA SGKTYGSPCV NYPDSEHIQQ LKNKLLVDFA  180
NSDGRNYLFP INEKQDFRIL DKSYDSPHGQ FSFSSQGEKQ VIRPLGVMPL NSGNSFTSGA  240
AISSKTRIRW TTELHEKFVE CVNLLGGADK ATPKAILKLM NSDGLTIFHV KSHLQKYRIA  300
KYMPDSTEGK SERRSSLNDV TQIEIKDGVQ LKEALQLQLD VQRRLHEQLE IQRNLQLRIE  360
EQGRQLKMMF DEQQKTRHTL FADQNSDNMS PNGPTFSLDE VQVSSEEGSG CNNFQTKIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-23245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-23245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-23245302158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-23245302158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-23245302158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-23245302158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-23245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-23245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-23245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-23245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-23245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-23245302259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021865284.10.0myb family transcription factor PHL5-like
RefseqXP_021865285.10.0myb family transcription factor PHL5-like
TrEMBLA0A0K9RV660.0A0A0K9RV66_SPIOL; Uncharacterized protein
STRINGXP_010672678.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.17e-72G2-like family protein