PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_024510_mkiy.t1
Common NameSOVF_024510
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 298aa    MW: 33520.6 Da    PI: 9.4706
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_024510_mkiy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.7e-1476121147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg W + Ed +l+++v q+G+ +W+ Ia+++   R++k+c++rw++ 
  Sp_024510_mkiy.t1  76 RGHWRPAEDAKLKQLVLQFGPQNWNVIAEKLD-ARSGKSCRLRWFNQ 121
                        899*****************************.***********996 PP
2Myb_DNA-binding54.62.6e-17128170145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        r+ +T+eE+e+l++a +++G++ W+ Iar ++ gRt++ +k++w+
  Sp_024510_mkiy.t1 128 RKQFTEEEEERLKNAQRMYGNK-WAIIARLFP-GRTDNAVKNHWH 170
                        789*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.02171122IPR017930Myb domain
SMARTSM007179.1E-1175124IPR001005SANT/Myb domain
SuperFamilySSF466892.21E-2676169IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-2477128IPR009057Homeodomain-like
CDDcd001671.77E-1079120No hitNo description
PfamPF139216.6E-1579139No hitNo description
PROSITE profilePS5129423.687123177IPR017930Myb domain
SMARTSM007172.9E-14127175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-19129172IPR009057Homeodomain-like
CDDcd001672.42E-11131172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MSSPVLDLCL STTTTNTKNQ DQDCEVTKMG FQIWSSTSSS IVNPHLEGLK GQNCPENDVG  60
VVSKVSRPPS SKLCSRGHWR PAEDAKLKQL VLQFGPQNWN VIAEKLDARS GKSCRLRWFN  120
QLDPKINRKQ FTEEEEERLK NAQRMYGNKW AIIARLFPGR TDNAVKNHWH VMEARAEREK  180
SNLFTTRKRS HNKMILQLHD DHGRNDNVTA MIMKKSKITG SDSTSSTVSS TMFNNSTTTK  240
NVDHESGTST CTELSLSTNS VQVPGGYMPG PGISYNPVVY QQQQQQPCKS DHEKGTFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-2873169197C-Myb DNA-Binding Domain
1msf_C2e-2873169197C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021865407.10.0transcription factor MYB15-like
TrEMBLA0A0K9RX750.0A0A0K9RX75_SPIOL; Uncharacterized protein
STRINGXP_010695522.11e-98(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-61myb domain protein 105