PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_023740_theh.t1
Common NameSOVF_023740
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 451aa    MW: 50306.9 Da    PI: 6.0311
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_023740_theh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.7e-12277319754
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          Er+RR+ri +++  Lr l+Pk      +K+ Ka++L  A++YI +L
  Sp_023740_theh.t1 277 LTERNRRQRISNGLLSLRALVPKI-----TKMHKAATLADAIDYIEEL 319
                        67*********************7.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.0E-2011163IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088814.335270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-14272335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-15272335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.85E-10272324No hitNo description
PfamPF000102.8E-9275319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-11276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550214.3E-5384449No hitNo description
Gene3DG3DSA:3.30.70.2603.7E-5385449No hitNo description
PROSITE profilePS516719.66386451IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MSHLERALEW LRPLVLNSNI WDYCVLWKLG DDPSRFIEWL GCCCNGGGKQ DIGLKKRKKE  60
KNNTFQFCRD ATFVHFANTT SCQSLANLPQ FMSIYSGLHG EVVISCQPRW LASTSEISDL  120
KVSTEESCGT HVLIPVLGGL VELYSSKHVE EDESVIDYVK GQFNIYAELE TMSTSTISFD  180
GQSIDPIFDT KSNSCLSSLN QSNMPAWPQS TLDGSSTGSF PSDERPSPDS NPCSVSQDTF  240
FKPLTVCHDN STIEKDIRVV EIKHKPERGT GKSKNLLTER NRRQRISNGL LSLRALVPKI  300
TKMHKAATLA DAIDYIEELN NEIKKLQDEL KSLMEEDSDE KNTSKLNISH LNENISNPKQ  360
ANSSITERPK LEVHVQVNEL GSGNFLLKIV CQQKPGVYTK LLEALGALDL PIKDANLTTC  420
DGKVSTIFTV QSNKKDIREK DLRESLASLT G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15458KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021842759.10.0transcription factor bHLH90
TrEMBLA0A0K9RVS10.0A0A0K9RVS1_SPIOL; Uncharacterized protein
STRINGXP_010682551.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.12e-37bHLH family protein