PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_023170_ocqo.t1
Common NameSOVF_023170
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28476.2 Da    PI: 9.8703
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_023170_ocqo.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.13.7e-312776150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+i+fss+g+lyey+
  Sp_023170_ocqo.t1 27 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYA 76
                       79***********************************************8 PP
2K-box103.72.3e-34981958100
              K-box   8 s.leeakaeslqqelakLkkeienLqreq....RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                          ++ea+a+++qqe+akL+++i++  +++    Rh++Ge+L+sLs+keL++Le++Lek++++iRskKnell+++ie +qk+e el+++n+ L
  Sp_023170_ocqo.t1  98 GsVAEANAQYYQQEAAKLRNQIRTATENNrllsRHMMGEGLSSLSMKELKNLETKLEKGISRIRSKKNELLFAEIEFMQKREIELHNNNQFL 189
                        3499********************9966423338********************************************************** PP

              K-box  95 rkklee 100
                        r+++ e
  Sp_023170_ocqo.t1 190 RARISE 195
                        *99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.9921979IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-421978IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.07E-322091IPR002100Transcription factor, MADS-box
CDDcd002654.32E-452094No hitNo description
PRINTSPR004046.0E-332141IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002175IPR002100Transcription factor, MADS-box
PfamPF003192.3E-262875IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-334156IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-335677IPR002100Transcription factor, MADS-box
PfamPF014863.4E-23103193IPR002487Transcription factor, K-box
PROSITE profilePS5129713.906105199IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDFPSQAMEE GSPSSQRKMG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSVLCDAE  60
IALIVFSSRG RLYEYANQSV KGTIDRYKKA CSDQTGAGSV AEANAQYYQQ EAAKLRNQIR  120
TATENNRLLS RHMMGEGLSS LSMKELKNLE TKLEKGISRI RSKKNELLFA EIEFMQKREI  180
ELHNNNQFLR ARISENERAQ QSMSLMPPGG SDYDLVPSQS FDSRNYFQVN ALQPNSQYAR  240
QDQTPLQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-211987169Myocyte-specific enhancer factor 2B
1tqe_Q5e-211987169Myocyte-specific enhancer factor 2B
1tqe_R5e-211987169Myocyte-specific enhancer factor 2B
1tqe_S5e-211987169Myocyte-specific enhancer factor 2B
5f28_A5e-211987169MEF2C
5f28_B5e-211987169MEF2C
5f28_C5e-211987169MEF2C
5f28_D5e-211987169MEF2C
6byy_A6e-211987169MEF2 CHIMERA
6byy_B6e-211987169MEF2 CHIMERA
6byy_C6e-211987169MEF2 CHIMERA
6byy_D6e-211987169MEF2 CHIMERA
6c9l_A5e-211987169Myocyte-specific enhancer factor 2B
6c9l_B5e-211987169Myocyte-specific enhancer factor 2B
6c9l_C5e-211987169Myocyte-specific enhancer factor 2B
6c9l_D5e-211987169Myocyte-specific enhancer factor 2B
6c9l_E5e-211987169Myocyte-specific enhancer factor 2B
6c9l_F5e-211987169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6600070.0AY660007.1 Spinacia oleracea C class floral identity transcription factor AGAMOUS mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021846001.10.0floral homeotic protein AGAMOUS isoform X2
SwissprotQ408721e-132AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLA0A0K9RVU00.0A0A0K9RVU0_SPIOL; Uncharacterized protein
STRINGXP_010687169.11e-173(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-100MIKC_MADS family protein