PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_021810_twdn.t2
Common NameSOVF_021810
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family CO-like
Protein Properties Length: 360aa    MW: 40127.7 Da    PI: 5.0527
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_021810_twdn.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.25.9e-071555438
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                       r+C+ + + + + +C+ ++ +lC +C   +H        H+
  Sp_021810_twdn.t2 15 RVCDSCRSAPCTVYCRADSAYLCTSCDARIHAAnqvasrHE 55
                       79*****************************6556666666 PP
2zf-B_box29.51.5e-0957102342
           zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                         ++C+ +e+ ++ + C+ +   lC++C   +H+       H +vp+
  Sp_021810_twdn.t2  57 VWVCEACERAPAAFLCKADAASLCATCDADIHSAnplarrHHRVPI 102
                        689*****************************66899999877775 PP
3CCT70.73.6e-24291334144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        Rea+++RY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Sp_021810_twdn.t2 291 REARVMRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 334
                        9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.5E-101259IPR000315B-box-type zinc finger
PROSITE profilePS5011910.7361259IPR000315B-box-type zinc finger
CDDcd000211.20E-81559No hitNo description
PROSITE profilePS5011911.13555102IPR000315B-box-type zinc finger
PfamPF006432.3E-756102IPR000315B-box-type zinc finger
CDDcd000212.61E-858102No hitNo description
SMARTSM003361.2E-960102IPR000315B-box-type zinc finger
PfamPF062033.4E-18291333IPR010402CCT domain
PROSITE profilePS5101716.747291333IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MMKKEVPGDT NSWARVCDSC RSAPCTVYCR ADSAYLCTSC DARIHAANQV ASRHERVWVC  60
EACERAPAAF LCKADAASLC ATCDADIHSA NPLARRHHRV PIMPVGCVYG PSDGFLELPD  120
GDDQTTDHEG DEDEAASWLL LNPGKNSNNL NTNGFLTGGG EVDEYLDLFE YNSGADNQFC  180
EPSYNQQQEF SVPEKNCGDD SVVPVQCREP KDHQIQYQNF LFGMECETKP EYNYNTSISH  240
SVSVSSLDVG VVPESTMSDM SVSHPRTPKG TIDLFSSPPT QVPTQLSPMD REARVMRYRE  300
KKKNRKFEKT IRYASRKAYA ETRPRIKGRF AKRTDVEAEM DQMFTNSLMA DGGYGIVPSF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3957700.0EU395770.2 Chenopodium rubrum CONSTANS-like protein 1 (COL1) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021854091.10.0zinc finger protein CONSTANS-LIKE 2 isoform X1
SwissprotQ965021e-142COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A0K9RY140.0A0A0K9RY14_SPIOL; Uncharacterized protein
STRINGXP_010694604.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-122CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]