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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_021810_twdn.t1 | ||||||||
Common Name | SOVF_021810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | CO-like | ||||||||
Protein Properties | Length: 330aa MW: 36863.3 Da PI: 5.6308 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.4 | 5.2e-07 | 15 | 55 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 r+C+ + + + + +C+ ++ +lC +C +H H+ Sp_021810_twdn.t1 15 RVCDSCRSAPCTVYCRADSAYLCTSCDARIHAAnqvasrHE 55 79*****************************6556666666 PP | |||||||
2 | zf-B_box | 29.7 | 1.4e-09 | 57 | 102 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ + C+ + lC++C +H+ H +vp+ Sp_021810_twdn.t1 57 VWVCEACERAPAAFLCKADAASLCATCDADIHSAnplarrHHRVPI 102 689*****************************66899999877775 PP | |||||||
3 | CCT | 70.9 | 3.2e-24 | 261 | 304 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Sp_021810_twdn.t1 261 REARVMRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 304 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.5E-10 | 12 | 59 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.736 | 12 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.65E-8 | 15 | 59 | No hit | No description |
PROSITE profile | PS50119 | 11.135 | 55 | 102 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.0E-7 | 56 | 102 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.85E-8 | 58 | 102 | No hit | No description |
SMART | SM00336 | 1.2E-9 | 60 | 102 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 3.0E-18 | 261 | 303 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.747 | 261 | 303 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048576 | Biological Process | positive regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MMKKEVPGDT NSWARVCDSC RSAPCTVYCR ADSAYLCTSC DARIHAANQV ASRHERVWVC 60 EACERAPAAF LCKADAASLC ATCDADIHSA NPLARRHHRV PIMPVGCVYG PSDGFLELPD 120 GDDQTTDHEG DEDEAASWLL LNPGADNQFC EPSYNQQQEF SVPEKNCGDD SVVPVQCREP 180 KDHQIQYQNF LFGMECETKP EYNYNTSISH SVSVSSLDVG VVPESTMSDM SVSHPRTPKG 240 TIDLFSSPPT QVPTQLSPMD REARVMRYRE KKKNRKFEKT IRYASRKAYA ETRPRIKGRF 300 AKRTDVEAEM DQMFTNSLMA DGGYGIVPSF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Does not affect flowering time. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU395771 | 0.0 | EU395771.1 Chenopodium rubrum CONSTANS-like protein 2 (COL2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021854092.1 | 0.0 | zinc finger protein CONSTANS-LIKE 2 isoform X2 | ||||
Swissprot | Q96502 | 1e-128 | COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2 | ||||
TrEMBL | A0A0K9RWH4 | 0.0 | A0A0K9RWH4_SPIOL; Uncharacterized protein | ||||
STRING | XP_010694604.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02380.1 | 1e-121 | CONSTANS-like 2 |
Publications ? help Back to Top | |||
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