PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_019610_fotx.t1
Common NameSOVF_019610
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 269aa    MW: 30731.5 Da    PI: 6.6326
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_019610_fotx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.6e-161562148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W++eEd++l+d++ q+G g+W++++   g+ R +k+c++rw +yl
  Sp_019610_fotx.t1 15 KGLWSPEEDQRLKDYIIQHGIGCWSSVPLNAGLQRNGKSCRLRWINYL 62
                       678*******************************************97 PP
2Myb_DNA-binding52.41.2e-1668113148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg ++ +E+e ++ +++ lG++ W++Ia++++ gRt++++k++w++yl
  Sp_019610_fotx.t1  68 RGMFSSQEEEMILTLHQTLGNK-WSLIAKHLP-GRTDNEIKNYWHSYL 113
                        7889******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.5271062IPR017930Myb domain
SuperFamilySSF466893.67E-2913109IPR009057Homeodomain-like
SMARTSM007172.2E-111464IPR001005SANT/Myb domain
PfamPF002493.9E-131562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-211669IPR009057Homeodomain-like
CDDcd001675.49E-101862No hitNo description
PROSITE profilePS5129424.10163117IPR017930Myb domain
SMARTSM007178.6E-1567115IPR001005SANT/Myb domain
PfamPF002492.6E-1568113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2570116IPR009057Homeodomain-like
CDDcd001672.49E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGFKPSQKPT KKHKKGLWSP EEDQRLKDYI IQHGIGCWSS VPLNAGLQRN GKSCRLRWIN  60
YLRPGLKRGM FSSQEEEMIL TLHQTLGNKW SLIAKHLPGR TDNEIKNYWH SYLKKRSEKS  120
EDNKLAINIS NTEEIDSFMN QTTKTSKIEL DFHERTEAEQ VQEQEHESIL PRLVFADWLP  180
NNYSGMQNNS LCFTAAEKQQ GDFMVDFGYN EGGSSSSIDK FSQEIVGDVV MQKSMLDLPL  240
GSSNNFMDFS AVDGVYSSGF FMSNSGIYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-231511627127MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021842113.10.0transcription factor LAF1-like
TrEMBLA0A0K9RYI90.0A0A0K9RYI9_SPIOL; Uncharacterized protein
STRINGXP_010667575.11e-106(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.13e-57myb domain protein 19