PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_018030_yjcc.t1
Common NameSOVF_018030
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 387aa    MW: 42487 Da    PI: 5.3606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_018030_yjcc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.57.6e-16160206455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  E+rRR++iN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Sp_018030_yjcc.t1 160 VHNLSEKRRRSKINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 206
                        6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-20153215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-20153215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.873156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-16159210No hitNo description
PfamPF000102.7E-13160206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-18162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MVFTITNNSS SSPPQQQPPD DISIFLRQIL HGSSSSSSQP QPFISAPSPS PLMRTHAQDQ  60
LPCFASLLQN IPASNRLAVD RISHNNTTLN GVIFPVPAAS NLSSESLSSS AQLRSFDNND  120
YAEDNECESE EGNDVAVGEE EETKQQQLRN QSKRSRAAEV HNLSEKRRRS KINEKMKALQ  180
NLIPNSNKTD KASMLDEAIE YLKQLQLQVQ MLSMRSGLNL HPMSLPEGQE ILHPSQIFQM  240
GSDDYDNDGG GSYDLNMTNT LNTIPETSNT MLNLPNQCTS SVRPSLPALP SKTDVEAMSF  300
GLESCVPANF HPLQLRNSAQ ERSMPHDNIA TNSLVTTSTR LGHNSVDEWM HQKHGSTILE  360
SNSGQNHLIS SNFSGLLGST SGAQMTR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021837794.10.0transcription factor SPATULA-like isoform X1
TrEMBLA0A0K9RXF10.0A0A0K9RXF1_SPIOL; Uncharacterized protein
STRINGXP_010667415.11e-154(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-43bHLH family protein