PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_017620_pjxq.t1
Common NameSOVF_017620
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NAC
Protein Properties Length: 291aa    MW: 32664.6 Da    PI: 7.4684
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_017620_pjxq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.48.4e-51141501128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+evd++k++PwdLp     + +e yfFs+r+ ky++g+r+nrat sgyWkatgkdk+v
  Sp_017620_pjxq.t1  14 LPPGFRFHPTDEELVVQYLKRKVYDCPLPA-SIIPEVDVCKSDPWDLP---GDKGQERYFFSTREAKYPNGNRSNRATVSGYWKATGKDKAV 101
                        79****************************.89***************...3467899********************************** PP

                NAM  93 lskkgel.............vglkktLvfykgrapkgektdWvmheyrl 128
                        ++ ++++             vg+kktLvfy+g+ p+g++tdW+mheyrl
  Sp_017620_pjxq.t1 102 VAGGKSNhhhgnhhnnspliVGMKKTLVFYRGKPPNGSRTDWIMHEYRL 150
                        *9633336677888999999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-579190IPR003441NAC domain
PROSITE profilePS5100554.99314190IPR003441NAC domain
PfamPF023651.7E-2715150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MERMNFVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVYDCP LPASIIPEVD VCKSDPWDLP  60
GDKGQERYFF STREAKYPNG NRSNRATVSG YWKATGKDKA VVAGGKSNHH HGNHHNNSPL  120
IVGMKKTLVF YRGKPPNGSR TDWIMHEYRL VDTSQALINP QALNSPFKRG LLQKTGEATG  180
DWVLCRIFLK KRNNAAAKND QEEEEEGIVC QEEDDKGCSK MLGNEKPVFY DFMARDLNLP  240
ATCSSSSGSS AVTDVDGNDN IKTDDINVES SEERDDSSSS CNSISFLRRK P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-461219515169NO APICAL MERISTEM PROTEIN
1ut4_B4e-461219515169NO APICAL MERISTEM PROTEIN
1ut7_A4e-461219515169NO APICAL MERISTEM PROTEIN
1ut7_B4e-461219515169NO APICAL MERISTEM PROTEIN
3swm_A4e-461219518172NAC domain-containing protein 19
3swm_B4e-461219518172NAC domain-containing protein 19
3swm_C4e-461219518172NAC domain-containing protein 19
3swm_D4e-461219518172NAC domain-containing protein 19
3swp_A4e-461219518172NAC domain-containing protein 19
3swp_B4e-461219518172NAC domain-containing protein 19
3swp_C4e-461219518172NAC domain-containing protein 19
3swp_D4e-461219518172NAC domain-containing protein 19
4dul_A4e-461219515169NAC domain-containing protein 19
4dul_B4e-461219515169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845942.10.0NAC domain-containing protein 83
SwissprotQ9FY938e-86NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0K9RXF00.0A0A0K9RXF0_SPIOL; Uncharacterized protein
STRINGXP_010682684.11e-147(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.17e-83NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]