PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_017570_ahwt.t1
Common NameSOVF_017570
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family CO-like
Protein Properties Length: 521aa    MW: 57749.1 Da    PI: 6.0249
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_017570_ahwt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.93.1e-063466436
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                       + C+ ++++ + ++C+ +   lC  C ++ H+ 
  Sp_017570_ahwt.t1 34 NPCDFCNQQTAVIYCRADTAKLCLLCDQHVHSA 66
                       78***************************9954 PP
2zf-B_box16.81.4e-0576114337
           zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 
                        +  C+ ++ ++++  C++ + l+C+dC +  H +    H
  Sp_017570_ahwt.t1  76 NLLCDGCGTQPATVKCFTHNLLFCHDCDFDLHLNdsypH 114
                        678**************************9997656666 PP
3CCT63.47e-22465507143
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                        R +a++RYkeK+ktR++eK+irYesRKa+A++R+RvKGrFvk 
  Sp_017570_ahwt.t1 465 RGNAMQRYKEKKKTRRYEKHIRYESRKARADTRKRVKGRFVKI 507
                        7789*************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.0E-113178IPR000315B-box-type zinc finger
PROSITE profilePS501199.0583178IPR000315B-box-type zinc finger
CDDcd000211.64E-73575No hitNo description
CDDcd000219.20E-578107No hitNo description
PROSITE profilePS5101714.723465507IPR010402CCT domain
PfamPF062035.8E-16465506IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MGTSSKGVGV GVVVVVGEEE KMQSVTTKTE QIKNPCDFCN QQTAVIYCRA DTAKLCLLCD  60
QHVHSANSLS RKHVRNLLCD GCGTQPATVK CFTHNLLFCH DCDFDLHLND SYPHDRSVEG  120
LFSCPTASYL TTAIGLDPAT KKPTKPAVDD DSLLIIDGDG AHDPWADLLV PAHHNVNVGP  180
TFPWGFDDNA NDDPGVVNGL IKNCFNGKKQ EAAMKQYLHL QKKRKDSDQE TGDITNNPLL  240
VVPAVANDDF ILGLENNNNN NNNNNNNNTT SNYDINQNQS ILFQQQQQQD EANFTSFMGL  300
TTNNTINSNN AINVDGPAAG NVMWESSPTN PPIQIWDFNS GRMRDHEEGG RLNIGYRESE  360
VGFMINTNSY NNSLVPETGL PTSNLYDINC SDDIRMFNSK MQNSAVSQGP ATPENNNVAI  420
IRPSSGSVFG KNKSIDIHFM DQTVFLGGEN GVRTEADMEM LAQNRGNAMQ RYKEKKKTRR  480
YEKHIRYESR KARADTRKRV KGRFVKINGA SSDQWSPTDT V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845948.10.0zinc finger protein CONSTANS-LIKE 15-like
TrEMBLA0A0K9RZ570.0A0A0K9RZ57_SPIOL; Uncharacterized protein
STRINGXP_010682677.11e-156(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.19e-37B-box type zinc finger protein with CCT domain