PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_017070_nwdp.t1
Common NameSOVF_017070
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 700aa    MW: 78058.4 Da    PI: 6.9682
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_017070_nwdp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000137798223
                       EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                       kC++C++ F +  n++rH+r+H
  Sp_017070_nwdp.t1 77 KCEKCSREFCSTINYRRHMRLH 98
                       7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.6817698IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MPLPKIKASG VADAMKVDDG NDSLDTFIRQ AIGKEPSLSF SRANDSPVQW IQLLHALDQQ  60
DLPGWPLLSP LKVQMQKCEK CSREFCSTIN YRRHMRLHRR NLNLDKDSTV KNRDLLQAFW  120
DKLCPEEAME VMSFDDVSLE GVSGCSIVKA LASFIRKPGF SLPQSYVKSG SALLDLVQGR  180
PSRFPITSQE LFSILDEASE KTFLCAGTAE SLQKYVFDGE AGKIGLEMRN LVACTSFLVE  240
QKVVKACLAD MDAEALRHQK LLVEEEEAAQ RRQAAILEKK RQKKLRQKEQ RAKEQASVET  300
YDSPEESSPS PPTSSPVITP VSILDVPEIP HDLTLSSSDP VQIMNVEEAD NDKIHEYEYS  360
DLENSQYVYP DLGTYHNVEH NRTSHRSGRR YTVSSRWQVP KLQKTPNGFH NSHNNNYQAT  420
KLGTMQKHTS SRDSRSSAAA NGTKVWTPKP KSDTDEEGCK NRLQIEAPNP LGQDKKHEVL  480
IGSISITLGN CNNLQHEEKS ASELSTPDVN GVHERVVKNE AVQGTANRST VKLWRPVSRH  540
DQGGQLPIEN GGSAGEVGTI PCNNSNEVQQ TCEAESYSDC RGENHASVEG GFQRGSSFSS  600
HVAEAFLATR WKEAIASNHV QLVLFTEARP PGCPEIQNET QEIARLSRLE QRGILHSAEN  660
RLESYTNNLE HSVTVKSKNR AKAEKGGNKV KYIPKQRSAY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277284EKKRQKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844267.10.0uncharacterized protein LOC110784153
RefseqXP_021844268.10.0uncharacterized protein LOC110784153
RefseqXP_021844269.10.0uncharacterized protein LOC110784153
RefseqXP_021844270.10.0uncharacterized protein LOC110784153
TrEMBLA0A0K9RXQ10.0A0A0K9RXQ1_SPIOL; Uncharacterized protein
STRINGXP_010671848.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-114C2H2-like zinc finger protein