PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_016700_rygs.t1

Common Name

SOVF_016700

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

G2-like

Protein Properties

Length: 376aa MW: 43364 Da PI: 5.9153

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_016700_rygs.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.9	3.9e-32	84	137	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rF++ave+LGG++kAtPk +l+lm++kgL+++hvkSHLQ+YR+ Sp_016700_rygs.t1 84 PRLRWTPDLHLRFIHAVERLGGQDKATPKLVLQLMNIKGLSIAHVKSHLQMYRS 137 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.362	80	140	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.9E-30	80	138	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.23E-15	81	138	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.7E-23	84	139	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-9	85	136	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MMQEWHDLSE CSNTNQCNQE GDDEEEDQDD EEESDGNDEG RTNNNNNNNN GGGSSSNSTV 60 EEMSDELKKS SSSSVRPYVR SKTPRLRWTP DLHLRFIHAV ERLGGQDKAT PKLVLQLMNI 120 KGLSIAHVKS HLQMYRSKKI EDQSQVTCDQ RHLFEVGDCN IFNLSQLPLL QGYCPTPNSS 180 FRTVDPTWTT HQKWMQDLYT IEMDSRMKDN VVWARYGNDQ QYPPRVIDKE ERSIQHYSNQ 240 TWQNPGMRPI ITKELSPIRT TQHHPQHQDD ILEQERFISS SNNKPKESLQ KQMMLKRKRV 300 DWDGNIDLDL SLKPPRKCSY QDDEQVSLSL VLHHNSPPSS SSSKLEFKVK EGVDDSINKK 360 KQECCGRGTS TLDLTL

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MMQEWHDLSE CSNTNQCNQE GDDEEEDQDD EEESDGNDEG RTNNNNNNNN GGGSSSNSTV  60
EEMSDELKKS SSSSVRPYVR SKTPRLRWTP DLHLRFIHAV ERLGGQDKAT PKLVLQLMNI  120
KGLSIAHVKS HLQMYRSKKI EDQSQVTCDQ RHLFEVGDCN IFNLSQLPLL QGYCPTPNSS  180
FRTVDPTWTT HQKWMQDLYT IEMDSRMKDN VVWARYGNDQ QYPPRVIDKE ERSIQHYSNQ  240
TWQNPGMRPI ITKELSPIRT TQHHPQHQDD ILEQERFISS SNNKPKESLQ KQMMLKRKRV  300
DWDGNIDLDL SLKPPRKCSY QDDEQVSLSL VLHHNSPPSS SSSKLEFKVK EGVDDSINKK  360
KQECCGRGTS TLDLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-17	85	139	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-17	85	139	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-17	85	139	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-17	85	139	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-17	85	139	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-17	85	139	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-17	85	139	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-17	85	139	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021852097.1	0.0	uncharacterized protein LOC110791636
TrEMBL	A0A0K9RXN8	0.0	A0A0K9RXN8_SPIOL; Uncharacterized protein
STRING	XP_010676795.1	1e-119	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-50	G2-like family protein