PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_016050_cjng.t1
Common NameSOVF_016050
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 594aa    MW: 64923.7 Da    PI: 8.4141
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_016050_cjng.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-05107129123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C++C+k F r  nL+ H r H
  Sp_016050_cjng.t1 107 FICEICNKGFQRDQNLQLHRRGH 129
                        89*******************88 PP
2zf-C2H211.60.00087184206123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC++C+k +  +s+ k H + +
  Sp_016050_cjng.t1 184 WKCEKCSKKYAVQSDWKAHSKIC 206
                        58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-5106129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.01E-6106129No hitNo description
PROSITE profilePS5015710.845107129IPR007087Zinc finger, C2H2
SMARTSM003550.022107129IPR015880Zinc finger, C2H2-like
PfamPF121717.3E-5107129IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
SMARTSM00355250149179IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.0E-4172205IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.01E-6179204No hitNo description
SMARTSM00355140184204IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010150Biological Processleaf senescence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MMKGLGLDES MSNLTSTISG ETSISSNARN DQSSSTTTIN AHANTNTNTN TTTNTMLYTQ  60
ASPSSLASPH QLHPPPAKKK RGLPGNPDPE AEVIALSPKS LLATNRFICE ICNKGFQRDQ  120
NLQLHRRGHN LPWKLKQRPK DQIIRKKVYV CPEPSCVHHE ASRALGDLTG IKKHFCRKHG  180
EKKWKCEKCS KKYAVQSDWK AHSKICGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESA  240
RAINPLSTLP SSAAGGMAGI NTNSTTPLSH FSLPPHLTSH HQLLQSLPLK REQPDHHHHH  300
HQLGQHSNMI NVRSDIPPWL ACPPPPQQNG LDGGGGQLDH HQQQSSLLYS FQHQQHQHHQ  360
QQQQQQQQQQ QQQQQQQYEQ QSSNNNALGS ALSSFQAPAN PHMSATALLQ KAAEMGVTVS  420
NQQHQLQQQQ QQQQQQQHGH QVVLTNNSTS CGLTVNPGFM EQGQVVTTTE NGDGTGGGQS  480
SMMHDVMLLN SFQSSASSAS GAFDSSTFGD FHHQAMTVTK SQLNGIGGGG GGGGGGNGGG  540
NGGGNEGLTR DFLGLRTFSH KDFLNMAGLG HMSPSSASFE QQHDHHQNNQ QTPW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34180241364Zinc finger protein JACKDAW
5b3h_F2e-34180241364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135146KQRPKDQIIRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021853977.10.0protein indeterminate-domain 7-like
SwissprotQ9FFH31e-113IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBLA0A0K9RXU80.0A0A0K9RXU8_SPIOL; Uncharacterized protein
STRINGXP_010669389.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-98C2H2 family protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  2. Long Y, et al.
    In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
    Nature, 2017. 548(7665): p. 97-102
    [PMID:28746306]