PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_015250_agko.t2
Common NameSOVF_015250
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 346aa    MW: 38126.7 Da    PI: 7.6145
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_015250_agko.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.2e-11277322655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++Er RR ri  ++ +L+el+P+     +k  s +++L +Av++Ik Lq
  Sp_015250_agko.t2 277 SIAERERRTRISGKLKKLQELVPNM----DKQTSYSDMLDLAVQHIKGLQ 322
                        689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.649271321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-13274336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.86E-9275326No hitNo description
Gene3DG3DSA:4.10.280.105.2E-12277335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-11277327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-8277322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MYSSSSSSQQ QQSSSNTQAN PNLMRYDSAP SSLLSNTVDS IIGNHHHQNH NHNHNHNHHH  60
FFNPESTHSK LSSGGGAESS RNTLTLLHQG PYGLSTESSS NNNIHNNNNN NNSNNGMDSP  120
SKTTSNLIRH SSSPAGFLSH LASDIGGSSI GHDQHMVSRL GSQLSFTRKD RNSLSQISEM  180
NESVVEGMSS DHDQRKRSGF SLSAWDDTND NNFIISTSSN KRGKAINDDI LNGLSAIDSQ  240
QAMALEMATM ERLMQVPENS VPCKIRAKRG FATHPRSIAE RERRTRISGK LKKLQELVPN  300
MDKQTSYSDM LDLAVQHIKG LQGEIEKLNH DLDHCKCGCK GETMQS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861721.10.0transcription factor bHLH129-like
TrEMBLA0A0K9RY730.0A0A0K9RY73_SPIOL; Uncharacterized protein
STRINGXP_010666766.11e-153(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.25e-61bHLH family protein