PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_015210_zrxi.t1
Common NameSOVF_015210
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 408aa    MW: 43942.4 Da    PI: 6.6814
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_015210_zrxi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24e-10251299355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Sp_015210_zrxi.t1 251 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 299
                        58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.13E-11246303No hitNo description
SuperFamilySSF474595.5E-17246316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485248298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16249316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-7251299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10254304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGDDGSSSQM GFQHNGEVAL NSPPPGVNSR SMTLSSVYGS SWDQMVSLSG QSGNFGDSSM  60
VSHGELSKPS SYPMLMESQG ISSLHLANYP ADQNLAHQML PKLPLFGGRN FPEVVGPFGL  120
AGGSHTPNAL FPHSYASNRN GLDEKQSPNV AQAERGCQIA DGRAVGLSPN GKRRRDSDSP  180
SPTNENPDGD PQKGHSSDGS GQKEQDDKKR NSVANSSGKQ TGKEAKDDSQ GEEPPKQNYI  240
HVRARRGQAT NSHSLAERVR REKISERMRL LQELVPGCNK ITGKAVMLDE IINYVQSLQQ  300
QVEFLSMKLA TVNPELNFDI ERLLTKDILH SRGNDSSALG FNQGIGSSHA FSQGIHQSLT  360
VLQNSASQYH HMPQAVWDGD LQSLLHMGFD SNSAVGGIGP NGNTKSEL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855573.10.0transcription factor bHLH74
RefseqXP_021855574.10.0transcription factor bHLH74
SwissprotQ6NKN97e-77BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A0K9S0140.0A0A0K9S014_SPIOL; Uncharacterized protein
STRINGXP_010687581.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.13e-79bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]