PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_014630_xyza.t1
Common NameSOVF_014630
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 355aa    MW: 40023.5 Da    PI: 6.9568
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_014630_xyza.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.79e-27152212259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dg++WrKYGqKe+ ++++prsYYrCt++   +C++kk+v+r ++dp +++i Y++eH+++
  Sp_014630_xyza.t1 152 EDGFTWRKYGQKEILNAKYPRSYYRCTHQklyKCKAKKQVQRLDDDPFTFDILYREEHTCH 212
                        7****************************9999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.5E-26146213IPR003657WRKY domain
SuperFamilySSF1182903.92E-24149213IPR003657WRKY domain
SMARTSM007742.1E-35151213IPR003657WRKY domain
PfamPF031061.4E-24152212IPR003657WRKY domain
PROSITE profilePS5081118.234152214IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MELDISNSMW VGGGGAPPLI VAQKCEEIIE VFNTAKQQLS NSGGCLHQLP LDYHHPYQPA  60
EMEAVFEYAH HHHPNNKGKG KEEVRVSLKA DSGGKDQEFG VHGIMTDIGG SSTSGLRSSS  120
SRRSSSRNDE EGRYRRVRMA APKIGNTEMP PEDGFTWRKY GQKEILNAKY PRSYYRCTHQ  180
KLYKCKAKKQ VQRLDDDPFT FDILYREEHT CHMSNTAPSS VPSPPSQTVQ DIFLTPHHPI  240
TTVASPYHEW LSIDHSTKPS LFESACTTFV EHQQQQELLY RVSSSSSILC TSNAEGETST  300
VRSHIGRDHQ AVDLLNNHHM VDWTEMFNSG SSSSNSMELI FAPTQDKWDN KIRKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-18152211968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021836320.10.0WRKY transcription factor 55
TrEMBLA0A0K9S0370.0A0A0K9S037_SPIOL; Uncharacterized protein
STRINGXP_010670103.11e-78(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.16e-37WRKY DNA-binding protein 55