PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_014220_wrfd.t1
Common NameSOVF_014220
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family RAV
Protein Properties Length: 327aa    MW: 37487.3 Da    PI: 9.3072
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_014220_wrfd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.31.2e-103885154
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                       s++kGV +   +g W A+I+       +  r++lg+f t+  Aa+a++ a+ kl+
  Sp_014220_wrfd.t1 38 SRFKGVVYQQ-NGHWGAQIYA------NhHRIWLGTFKTEAAAAAAYDSAAIKLR 85
                       789***9988.8******999......44**********99**********9997 PP
2B384.69.1e-27164266185
                        EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                        f k+ltpsdv+k++rlv+pk++a ++                  gg+++++++l+++d++ +sW+++++y+k+s+++v+t+GW++Fv+ ++L
  Sp_014220_wrfd.t1 164 FRKELTPSDVGKLNRLVIPKRYALKYfpvrddngrkfgvcegeeGGDQAGDMELKFYDKKMKSWKFRYCYWKSSQSFVFTRGWNKFVRVKEL 255
                        89******************************************99999******************************************* PP

                        -TT-EEEEEE- CS
                 B3  75 kegDfvvFkld 85 
                        +++D+v F++ 
  Sp_014220_wrfd.t1 256 EAKDIVSFYMC 266
                        ********954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-123897IPR016177DNA-binding domain
PfamPF008475.4E-63885IPR001471AP2/ERF domain
SMARTSM003801.1E-1739103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-153998IPR001471AP2/ERF domain
PROSITE profilePS5103216.5953997IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.8E-31155271IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-22163265No hitNo description
SuperFamilySSF1019363.27E-25163272IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-17164274IPR003340B3 DNA binding domain
PROSITE profilePS5086311.209164282IPR003340B3 DNA binding domain
PfamPF023624.5E-24164266IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MVSSIMTKTE ASDSNSSNSS QKRPNTVNKP SKQMGGSSRF KGVVYQQNGH WGAQIYANHH  60
RIWLGTFKTE AAAAAAYDSA AIKLRHGNSS DAHRNFPLTT LTIHEPNFQA YYNTDQVLNM  120
IKDGSYQIKF GEYLSSISQV SNAQTNNCYI NQNKQEGQYC QELFRKELTP SDVGKLNRLV  180
IPKRYALKYF PVRDDNGRKF GVCEGEEGGD QAGDMELKFY DKKMKSWKFR YCYWKSSQSF  240
VFTRGWNKFV RVKELEAKDI VSFYMCQFRE NDVGDVNKFW MIDIVKCTTT DENVDPKKKG  300
EAVETKKEKG FKLFGVQVVP VNCHEDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-2616026310100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845041.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6882e-92RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6P51e-92RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A0K9RYJ90.0A0A0K9RYJ9_SPIOL; Uncharacterized protein
STRINGXP_010676971.11e-172(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.12e-88RAV family protein