PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sp_013180_akjt.t2

Common Name

SOVF_013180

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

HB-other

Protein Properties

Length: 1192aa MW: 133338 Da PI: 7.0365

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_013180_akjt.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.7	3.5e-12	47	96	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ ql++Le+lF +++p++++ e+ A+ lgLt +qV+ WF rR ++k+ Sp_013180_akjt.t2 47 TPLQLQTLENLFSDDKNPTQSRLEDYASALGLTCEQVRRWFIERRRRDKQ 96 899********************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	3.1E-10	40	101	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-11	45	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.4E-11	45	101	IPR009057	Homeodomain-like
CDD	cd00086	7.87E-4	45	87	No hit	No description
PROSITE profile	PS50071	13.248	47	97	IPR001356	Homeobox domain
Pfam	PF00046	2.2E-9	47	96	IPR001356	Homeobox domain
PROSITE profile	PS50827	12.15	415	474	IPR018501	DDT domain
SMART	SM00571	1.5E-6	415	474	IPR018501	DDT domain
Pfam	PF02791	9.1E-9	420	471	IPR018501	DDT domain
Pfam	PF15612	2.0E-5	690	729	IPR028942	WHIM1 domain
Pfam	PF15613	1.6E-12	819	892	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1192 aa Download sequence Send to blast
MATTHLLRHY HGPLTISPTT SLTDFVINNN NGDDNDDDVG FNLLRKTPLQ LQTLENLFSD 60 DKNPTQSRLE DYASALGLTC EQVRRWFIER RRRDKQDAAR NIQGGNGSAQ RTDKGKSKMK 120 KKKNLSSLEP GEHGSCTRKP GLVQDMLYSP DYIFMKIFRK DGPPLGVEFD PLPDTVFQGS 180 NGIAGSRCCE AASQGEQRAF KRRKVTKSSV LDTEQCSRMK IPMKKHGKGK GLMSVLQLVN 240 SHAPFRDNDG ALKRGKMLPR KNSQPGKRHG MGKGFMTASQ LANPDSKRRT QRRKPTAQVR 300 RSGNKVQEKK KPPPRRKKVE SIQKEIQKAQ RNCCKIALDL SRYDENLCSF SAKADDEELE 360 LRELQAGPNP LTCGGHFANV GNGCCSLCKG LLPKFPPDAL RMRKPLCMHP WNSSLELEKK 420 LFKVFHFLYT YAAILDLCPF NLDEFAEAFC DKDSSLLGKL HVCLLGLLLS DIQKEISYGT 480 SIHSNKNGMF LNLLRMAGTQ DYAVNLWKTS LNPLTWTEIL RQILVTAGFG SKDSNQSKGC 540 LPKESDHMAR CGFHPDTLKG TLFSILFEQK NKGMKVNELA KYSQIVDLNL EKTDDELEDS 600 ICSILASDIT LFEKISSSTY RLRLTSIMKK DEDTLSDNDD NGSIDDGSRS FHSTNAECDS 660 GISSSRPDMG HQYPENNPSS LSSVIDESHP GESWLLGLME GEYSDLSIEE KLNTLLALVD 720 LVSAGSSIKM EDPSAAIADC VPRTYQHGSG GKIKRSTVQR PSLHISSCGD DRENGRFSSA 780 FYAVDSSVVL SMMSEECRYS GKKKGSNGAG NGDDLHPIQS IFLGSDRRYN RYWLFLGPCD 840 ADDPGHKRVY VESSDDGQWQ VIDSEEALCD LLDSLNDQGR REAVLLASLE KRMPFLVEEM 900 LSRIPIDISG SQSAQSGLSE IDRINEDSPS PISDIDNLSL GETLFNAVTS SDAAPFIVGK 960 KAEQQKQKYE RLQAYDSWIW NDFYSILHAV KHGKRSFFDS WTRCGSCNDL YWRDERHCKT 1020 CHTTFELDLD LEEKYAIHVA TCHAPEDADI CPMHKVLPSK LQALKAAIHV IELIMPESAL 1080 IGGWKKSAYK LWVRRLRRTS SLHEFLQVLG DFVGSLNVDW VSQFTATHKC KYTIEDFVAE 1140 FQTMPQTSSA VALWLVKLDA MIALQLDEKI VETAKGQNLV AAPVMVSVDD DD

Sequence ? help Back to Top

Protein Sequence Length: 1192 aa Download sequence Send to blast

MATTHLLRHY HGPLTISPTT SLTDFVINNN NGDDNDDDVG FNLLRKTPLQ LQTLENLFSD  60
DKNPTQSRLE DYASALGLTC EQVRRWFIER RRRDKQDAAR NIQGGNGSAQ RTDKGKSKMK  120
KKKNLSSLEP GEHGSCTRKP GLVQDMLYSP DYIFMKIFRK DGPPLGVEFD PLPDTVFQGS  180
NGIAGSRCCE AASQGEQRAF KRRKVTKSSV LDTEQCSRMK IPMKKHGKGK GLMSVLQLVN  240
SHAPFRDNDG ALKRGKMLPR KNSQPGKRHG MGKGFMTASQ LANPDSKRRT QRRKPTAQVR  300
RSGNKVQEKK KPPPRRKKVE SIQKEIQKAQ RNCCKIALDL SRYDENLCSF SAKADDEELE  360
LRELQAGPNP LTCGGHFANV GNGCCSLCKG LLPKFPPDAL RMRKPLCMHP WNSSLELEKK  420
LFKVFHFLYT YAAILDLCPF NLDEFAEAFC DKDSSLLGKL HVCLLGLLLS DIQKEISYGT  480
SIHSNKNGMF LNLLRMAGTQ DYAVNLWKTS LNPLTWTEIL RQILVTAGFG SKDSNQSKGC  540
LPKESDHMAR CGFHPDTLKG TLFSILFEQK NKGMKVNELA KYSQIVDLNL EKTDDELEDS  600
ICSILASDIT LFEKISSSTY RLRLTSIMKK DEDTLSDNDD NGSIDDGSRS FHSTNAECDS  660
GISSSRPDMG HQYPENNPSS LSSVIDESHP GESWLLGLME GEYSDLSIEE KLNTLLALVD  720
LVSAGSSIKM EDPSAAIADC VPRTYQHGSG GKIKRSTVQR PSLHISSCGD DRENGRFSSA  780
FYAVDSSVVL SMMSEECRYS GKKKGSNGAG NGDDLHPIQS IFLGSDRRYN RYWLFLGPCD  840
ADDPGHKRVY VESSDDGQWQ VIDSEEALCD LLDSLNDQGR REAVLLASLE KRMPFLVEEM  900
LSRIPIDISG SQSAQSGLSE IDRINEDSPS PISDIDNLSL GETLFNAVTS SDAAPFIVGK  960
KAEQQKQKYE RLQAYDSWIW NDFYSILHAV KHGKRSFFDS WTRCGSCNDL YWRDERHCKT  1020
CHTTFELDLD LEEKYAIHVA TCHAPEDADI CPMHKVLPSK LQALKAAIHV IELIMPESAL  1080
IGGWKKSAYK LWVRRLRRTS SLHEFLQVLG DFVGSLNVDW VSQFTATHKC KYTIEDFVAE  1140
FQTMPQTSSA VALWLVKLDA MIALQLDEKI VETAKGQNLV AAPVMVSVDD DD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	93	ERRRRD
2	89	94	RRRRDK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021866724.1	0.0	homeobox-DDT domain protein RLT3 isoform X1
TrEMBL	A0A0K9RYZ8	0.0	A0A0K9RYZ8_SPIOL; Uncharacterized protein
STRING	XP_010694636.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator