PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sp_013060_hufi.t1

Common Name

SOVF_013060

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

DBB

Protein Properties

Length: 320aa MW: 35736.8 Da PI: 5.7477

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_013060_hufi.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.4	3e-08	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +++ke++ fC ++ lC+ C ++ H+ H+ Sp_013060_hufi.t1 4 QCDVCSKKEASVFCSADEAALCDVCDDKVHHAnklaskHQ 43 7****************************74446777776 PP
2	zf-B_box	26.4	1.4e-08	55	93	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39 ++C+ ++e+++ lfC++++ lC++C l H Ht+ Sp_013060_hufi.t1 55 FPVCDICQENRALLFCQQDRAILCRECDLPLHTAneHTR 93 589***************************995567875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.978	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	5.72E-6	3	47	No hit	No description
Pfam	PF00643	2.7E-6	4	44	IPR000315	B-box-type zinc finger
SMART	SM00336	1.8E-8	4	47	IPR000315	B-box-type zinc finger
SMART	SM00336	2.3E-13	53	100	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.111	53	100	IPR000315	B-box-type zinc finger
Pfam	PF00643	5.9E-7	56	93	IPR000315	B-box-type zinc finger
CDD	cd00021	1.47E-9	56	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009641	Biological Process	shade avoidance
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MKIQCDVCSK KEASVFCSAD EAALCDVCDD KVHHANKLAS KHQRFSLLHP SSSQFPVCDI 60 CQENRALLFC QQDRAILCRE CDLPLHTANE HTRKHNRFLL TGIKLSEVIS DNITISNGNG 120 CESGDTVPDF KCTKTPTSVF SEKTLNSAVT NSSNSNSTIS SNINQLNCGG STSNISEYLI 180 DMLPGWHFED FLVDSASPAP FGFCSKSGNN HDLEVNEDVL SFFDVENESD QFTCCPTQSE 240 SFWVPQATTL WNVFGQPSEI HHYKNGIKPQ QQQQQQQQQQ QEAPPSVTTM KVKRKYLKDD 300 AFTVPEINSS VGSKRTRPLW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021860907.1	0.0	B-box zinc finger protein 20-like
TrEMBL	A0A0K9RZ11	0.0	A0A0K9RZ11_SPIOL; Uncharacterized protein
STRING	XP_010672311.1	1e-143	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	2e-67	salt tolerance homolog2