PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_012370_kzrr.t1
Common NameSOVF_012370
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 268aa    MW: 30153.6 Da    PI: 4.4532
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_012370_kzrr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-10147189855
                        HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         Er+RR r+++++  Lr l+P+      +K++Ka+i+  Av Y+++Lq
  Sp_012370_kzrr.t1 147 SERKRRGRMKEKLYALRALVPNI-----TKMDKASIVGDAVLYVQDLQ 189
                        6*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.678139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16141207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.96E-12141191No hitNo description
SuperFamilySSF474592.22E-15141204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-12145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-8147189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDDSNSSTPS LPLIHDFSLD FVEQDLNFNH VIEMLRGSET SDPSSICVNQ NFDPLSLTPD  60
NNYGMNFYQI PQDNVFNNFS SPTMSCTNNS LLNSLSGFDD ETVRGEDEEE DDDDDDDNYL  120
EAGEHSSATT KTTTKKGKLD RSRTLVSERK RRGRMKEKLY ALRALVPNIT KMDKASIVGD  180
AVLYVQDLQM QSKKLKSQIE GLESSLKAAD RGQGFADNPK KNASLDQFIP VCKIIMQVAK  240
CREEFNLPNM KVWISGALLN QGFEFQCF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021848296.11e-163transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLA0A0K9RZ490.0A0A0K9RZ49_SPIOL; Uncharacterized protein
STRINGXP_010689160.11e-110(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.11e-36FER-like regulator of iron uptake