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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sp_011740_wieo.t1 |
| Common Name | SOVF_011740 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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| Family |
BBR-BPC |
| Protein Properties |
Length: 231aa MW: 25167.4 Da PI: 10.324 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sp_011740_wieo.t1 | genome | TBVR | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 231.4 | 6.9e-71 | 78 | 231 | 144 | 301 |
GAGA_bind 144 akekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCC 235
++e ++ k+pk++ +++ k+++ + kk ++++a+ ++ k+ ++ n s + s++P+P+CsCtGa rqCY+WG+GGWqS+CC
Sp_011740_wieo.t1 78 ITEPPSI----PIKNPKRNPIDAALKEPKPKIKKGRSSKAKGGGARKNKNPNFHNNDSSTEASGIPAPICSCTGAARQCYRWGSGGWQSSCC 165
2222222....345555555555555444444555555555456677889999*************************************** PP
GAGA_bind 236 tttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
tt+iS yPLP+s++r gaR agrKmS+ga+ klL++L+aeGydl p+DLkdhWAkHGtnkfvti+
Sp_011740_wieo.t1 166 TTNISEYPLPMSATRAGARTAGRKMSHGAYDKLLQRLSAEGYDLEFPIDLKDHWAKHGTNKFVTIK 231
*****************************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 231 aa
Download sequence Send
to blast |
MGTFRSNYPI IPEGNRTRSV PHFSWFHPGS YLSATTRNGF SPFQGTQNNP DGGLPAVPIR 60
CMPINEPTNV VADAQTQITE PPSIPIKNPK RNPIDAALKE PKPKIKKGRS SKAKGGGARK 120
NKNPNFHNND SSTEASGIPA PICSCTGAAR QCYRWGSGGW QSSCCTTNIS EYPLPMSATR 180
AGARTAGRKM SHGAYDKLLQ RLSAEGYDLE FPIDLKDHWA KHGTNKFVTI K
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
