PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_011540_epwz.t1
Common NameSOVF_011540
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 612aa    MW: 65990.4 Da    PI: 6.6558
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_011540_epwz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.45.4e-32248305260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  d++++ei+Y+g+H+h+k
  Sp_011540_epwz.t1 248 DDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSP-DGTITEIIYKGQHDHPK 305
                        8****************************************.***************85 PP
2WRKY1084.7e-34423481159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+v+g+++prsYY+Ct++gCpv+k+ver+++dpk+v++tYeg+Hnhe
  Sp_011540_epwz.t1 423 LDDGYRWRKYGQKVVRGNPNPRSYYKCTHPGCPVRKHVERASHDPKAVITTYEGKHNHE 481
                        59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-27240306IPR003657WRKY domain
PROSITE profilePS5081122.974242306IPR003657WRKY domain
SuperFamilySSF1182906.15E-25243306IPR003657WRKY domain
SMARTSM007742.7E-34247305IPR003657WRKY domain
PfamPF031063.2E-24248304IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.1E-38408483IPR003657WRKY domain
SuperFamilySSF1182909.02E-30415483IPR003657WRKY domain
PROSITE profilePS5081138.102418483IPR003657WRKY domain
SMARTSM007745.1E-40423482IPR003657WRKY domain
PfamPF031062.2E-26424481IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MDGSLTSVDG DSPGNSGLMI ASVDGSDLRR NTNEACASTT GSNPQNNYNN NARYKLMSPA  60
KLPISRSACI TVPPMFSPTS FLESPVFLSN LKGEPSPTTG SFFKSQMMQS SSGGSSTFPS  120
VINSSNSLDG NQSSGFEFKP NSGSYSFGGF AFSGSLVSSA DLSQQQTGQV NQVQPECPPQ  180
SSDPPVAVKS EMNPPNEQRS TVALPSSSVP PEVDSNEFSQ KVDSNNEGQT PPSEQKGLGS  240
QVSERTSDDG YNWRKYGQKL VKGSEFPRSY YKCTHPNCEV KKLFERSPDG TITEIIYKGQ  300
HDHPKPQPNR RLPAGSMLSA LEEKSDKGPP FNGQEGLLAI SYGQTVHNNE SSGTPDQSSC  360
GANDNSGEVG ASQLNRITDD ADDDDPYAKR RRMEIGEMDI NSVVKPIREP RVVVQTVSEV  420
DILDDGYRWR KYGQKVVRGN PNPRSYYKCT HPGCPVRKHV ERASHDPKAV ITTYEGKHNH  480
EVPTARNSSH DTAAPQAASL ASRMGSREGN DAVSLDLGVG IRSGSGFVPG HHHQQGMGGE  540
HLPGQPQFSS HNLLLLQPNP MSNYPGYVNG GMVLYGSREN HSQGNNSIGN QPVNHSSANS  600
YQQNMGRILM GP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-37248483877Probable WRKY transcription factor 4
2lex_A3e-37248483877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021842619.10.0probable WRKY transcription factor 20
SwissprotQ93WV01e-157WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0K9S1830.0A0A0K9S183_SPIOL; Uncharacterized protein
STRINGXP_010675876.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-122WRKY family protein