PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_011330_gdsx.t1
Common NameSOVF_011330
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 349aa    MW: 38296.8 Da    PI: 8.1813
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_011330_gdsx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20181231255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+++AeIrdp+++g   r++lg+++ta eAa+a+++a+ +l+g
  Sp_011330_gdsx.t1 181 HYRGVRRRP-WGKYAAEIRDPNKRG--SRVWLGTYDTAIEAARAYDRAAFRLRG 231
                        7********.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.2E-32180240IPR001471AP2/ERF domain
SMARTSM003803.9E-37181245IPR001471AP2/ERF domain
CDDcd000181.48E-30181239No hitNo description
SuperFamilySSF541715.3E-23181241IPR016177DNA-binding domain
PfamPF008471.5E-14181231IPR001471AP2/ERF domain
PROSITE profilePS5103224.711181239IPR001471AP2/ERF domain
PRINTSPR003672.1E-13182193IPR001471AP2/ERF domain
PRINTSPR003672.1E-13221241IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MASCDESSAL DFIKSHLFSE LSPIGVNFSF NNNNFVNNGL NFDLNQSNIA KPESSIGKSN  60
SLSSQNSLSS QNSFSTSYFT GQQEMDSSSN LIKEEKAADF DFDFDFDVDF SKFETKEMST  120
PSPTFSGGSK SKFRERKPAM MKIAVPAPAK KFEVVEFVSE LTQKASNELA QKVEKQEAQR  180
HYRGVRRRPW GKYAAEIRDP NKRGSRVWLG TYDTAIEAAR AYDRAAFRLR GSKAILNFPL  240
EVGKLVEEAA ATAATAATTG ASSEGGNGGR KRKAVEETKK EVVVVTKKVK SEESSTTSCL  300
VDESFPLTPS SWTAFWDLDV KSGNGLFTVP PLSPLSPHPS IGYSQMAVM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-29180242163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856090.10.0ethylene-responsive transcription factor ERF105-like
TrEMBLA0A0K9RZH70.0A0A0K9RZH7_SPIOL; Uncharacterized protein
STRINGXP_010677102.11e-91(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-33ERF family protein