PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_010850_ckzq.t1
Common NameSOVF_010850
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 381aa    MW: 42443.6 Da    PI: 10.3393
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_010850_ckzq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.64e-31315372359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYe eHnh+
  Sp_010850_ckzq.t1 315 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEAEHNHP 372
                        9************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.0E-19266311IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.6E-33301373IPR003657WRKY domain
PROSITE profilePS5081130.32308374IPR003657WRKY domain
SuperFamilySSF1182901.02E-26311373IPR003657WRKY domain
SMARTSM007744.5E-38313373IPR003657WRKY domain
PfamPF031066.5E-27315372IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEGIEEANKA AVESCHRVLN ILSQTQDQTQ FRNLGSETQQ AVTKFKRVVS LLSNGLGHGR  60
ARIVKHNRKN PFTQSLFLES SSNVAAKFEQ QQQQQQQHQH QQHQQQAVKP TFQLLKPNLN  120
ETLIQENGST TGKSCLSMGG NLSLEMSSGG KSTPNSTPYP NPNPNPSPNP IQVVHPSSTA  180
HYQLFQQQQK QLQQQQLLQK QQMLYRRSNS GINLNFDNSS CTPTMSSTRS FISSLSVDGS  240
VAKMDGNGFN LIGASHSSDQ LLNQHRKRCS GKGEDGSLKC GSSGRCHCSK KRKNRVKRSI  300
KVPAISNKLA DIPPDEYSWR KYGQKPIKGS PHPRGYYKCS SMRGCPARKH VERCLEDPSM  360
LIVTYEAEHN HPRIPSQSAN T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-203093751075WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844089.10.0probable WRKY transcription factor 21
SwissprotO043361e-112WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A0K9S1G10.0A0A0K9S1G1_SPIOL; Uncharacterized protein
STRINGXP_010679182.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-94WRKY DNA-binding protein 21