PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_010770_sfci.t1
Common NameSOVF_010770
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Dof
Protein Properties Length: 257aa    MW: 28598 Da    PI: 4.3324
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_010770_sfci.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof117.17.1e-371673562
             zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                       a +cprC s+ntkfCyynnyslsqPr+fCk+CrryWt+GG+lrnvPvGgg+rk+++s+
  Sp_010770_sfci.t1 16 APNCPRCASSNTKFCYYNNYSLSQPRFFCKGCRRYWTRGGSLRNVPVGGGCRKSRRSR 73
                       568***************************************************9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-21362IPR003851Zinc finger, Dof-type
PfamPF027012.4E-311771IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.1831771IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101955IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MPMTTDSRWR ATINPAPNCP RCASSNTKFC YYNNYSLSQP RFFCKGCRRY WTRGGSLRNV  60
PVGGGCRKSR RSRSTKGFTR ALTGPHSDND PSSNSSSSGS ESGCPDIDMA AVFAKFLNHG  120
QQNANEEATT NTSSEASYGS PISSSCGLEL ENGLEYQKFS DEFLDLLPYD HNRQLQAEEV  180
NQGFINPDLA SFDDIIEDVF WSEDSNFSGF TWQPVSQMQE FDPSLPPADE SETSTNPLPS  240
DNWSYFDSTE FETFSGP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00405DAPTransfer from AT3G52440Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021837048.10.0dof zinc finger protein DOF3.5-like
TrEMBLA0A0K9RZP90.0A0A0K9RZP9_SPIOL; Uncharacterized protein
STRINGXP_010680114.11e-130(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.17e-30Dof family protein