PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_010400_zpzr.t1
Common NameSOVF_010400
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family G2-like
Protein Properties Length: 295aa    MW: 32188.2 Da    PI: 4.6207
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_010400_zpzr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.82.8e-29139191255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         rl+Wtp+LH+rFv++v +L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Sp_010400_zpzr.t1 139 SRLVWTPQLHKRFVDVVGHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 191
                        79******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.412135194IPR017930Myb domain
SuperFamilySSF466892.69E-19135195IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-29137196IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-23139191IPR006447Myb domain, plants
PfamPF002493.9E-7141190IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGEVNGDYDG RLYITGVEEE EENIHEWELG LPNFDDIAPL SQGLIPLELL SAFNIKPEPY  60
RTSGEVTQAS EDTLSILCGS NYKDFCEEND DDESGTKKQR RTDSPEDADS AAAEVAAEAA  120
MGGDFGTGGG GGEKTVKRSR LVWTPQLHKR FVDVVGHLGI KNAVPKTIMQ LMNVEGLTRE  180
NVASHLQKYR LYLKRMQGDD FDGGSNSSSE NGNGNGNGAM SGSVPVMGMG MTGMGNYNGF  240
EQHQNHNYSH NQPHNNNHYN YNQYSNGNGM MMQSGNKYGS MVSYHQSPTV GPGNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-34138194157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is essential for the generation of the circadian clock oscillation. Is necessary for activation of CCA1 and LHY expression. Is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. Directly regulates the expression of PRR9, a major component of the morning transcriptional feedback circuit, by binding specific sites on PRR9 promoter. Binds to its own promoter, inducing a negative auto-regulatory feedback loop within the core clock. Binds to ELF3 and associates with ELF4 in a diurnal complex which is required for the expression of the growth-promoting transcription factors PIF4 and PIF5 and subsequent hypocotyl growth in the early evening. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:21236673, ECO:0000269|PubMed:21753751, ECO:0000269|PubMed:22311777}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:17132630, ECO:0000269|PubMed:21753751}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021848027.11e-153transcription factor PCL1-like
SwissprotQ9SNB41e-63PCL1_ARATH; Transcription factor LUX
TrEMBLA0A0K9RZP80.0A0A0K9RZP8_SPIOL; Uncharacterized protein
STRINGXP_010685710.15e-96(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.22e-50G2-like family protein
Publications ? help Back to Top
  1. Higham CF,Husmeier D
    A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana.
    BMC Bioinformatics, 2013. 14 Suppl 10: p. S3
    [PMID:24267177]