PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_009930_fsem.t1
Common NameSOVF_009930
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 316aa    MW: 34807.6 Da    PI: 7.7847
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_009930_fsem.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017118140123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C+ C+ksFs+   L  H  +H
  Sp_009930_fsem.t1 118 YECKTCNKSFSSFQALGGHRASH 140
                        99**********99999998887 PP
2zf-C2H213.80.00018217239123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++Cg  Fs+   L  H+r+H
  Sp_009930_fsem.t1 217 HECGICGAEFSSGQALGGHMRRH 239
                        78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.35E-8118140No hitNo description
PROSITE profilePS5015710.99118145IPR007087Zinc finger, C2H2
SMARTSM003550.041118140IPR015880Zinc finger, C2H2-like
PfamPF139122.2E-12118142IPR007087Zinc finger, C2H2
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
SuperFamilySSF576676.35E-8212239No hitNo description
PfamPF139121.2E-11216241IPR007087Zinc finger, C2H2
PROSITE profilePS501579.411217239IPR007087Zinc finger, C2H2
SMARTSM003550.048217239IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280219239IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MVAQQQEAII GENNVVVEKN EIHKHSNNNM MMMIKGKRTK RPRPVSPLAL TMSSGTTTDG  60
GANSATSEEW AAPISSSTSE EEEDMAHCLI LLAQGSNQSS NNNNIITNHK GSNGITSYEC  120
KTCNKSFSSF QALGGHRASH KKPKLNVVSL SQLKKSSSVI FSLINNDNDN HHHHHQQYDQ  180
HLKDDGTTLS LQIANSSLYT TNISTNNNTN TNKTKVHECG ICGAEFSSGQ ALGGHMRRHR  240
PIGTTTTTTT TIPSPNVKDE KMTRNLLSLD LNLPAPEDEH HHHHHHQRDP SSKFVFSSNE  300
KTLVFTAASQ LIDCHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13943KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852502.11e-170zinc finger protein ZAT5-like
TrEMBLA0A0K9S1P00.0A0A0K9S1P0_SPIOL; Uncharacterized protein
STRINGXP_010696311.14e-92(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-47C2H2 family protein