PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_009540_chzc.t1
Common NameSOVF_009540
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 854aa    MW: 95298.1 Da    PI: 4.0364
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_009540_chzc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.3e-07387406525
                        --SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                        +C +fa+ G+C  G++C+F H
  Sp_009540_chzc.t1 387 ICEYFAK-GWCIKGSSCRFLH 406
                        6******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.7E-6382407IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.202382409IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-4387406IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MPSSDSHRSN NGDHLEEEEE EEEYEEVEEE VEEEEEVEEY EEVEEEVEEE VEEEVEEEVE  60
EYEEVEEEVE EYEEVEEEVE EEVEEEEVAE EVTMAEADEV VEGQEEEGDE EEEEEVEEEE  120
YEEVEEYEEV EEEVTDDDEY EPIVDEDAEL DEGDAAIAVK DVKLGEGDAT MAEEGVKLGE  180
GDATMAQAEN DGDDDEGAAE MNDVAMEIAP SDSSVLIGAD DQCNDGSQDE VYLRSGPTSG  240
VKSEASALHH THAAEVLCLD RNASPVLQNG SGMGISSIDV GCSKSPQLFQ HIAGPSNNGI  300
DAVEEKQVPV EQTILVSAPH AVSDQLNKVG TTDVEESKLL SKEADLRSPS RTGRDQRDSR  360
SWFPQVRPRS LSPGAECEDG NKRPAIICEY FAKGWCIKGS SCRFLHKRNH EEDAMQVEGN  420
ILLTKSEIRP DKGFGDNAAG KNSQKEHGES VRQYKDIDKI ALLERKGSSS LFSADSQKSF  480
SGKDGSRSIS TPREVEADIF KDNHSSDNNG LSVAEGSSML RADFFSRFGS STSEVGVSSG  540
SDSILRLVEE SAAMRRRYSL DVQSSLPSYR FSSWKNTSLL RNSPLYSGAD SAKFSDTSYT  600
LDELLSFKYK PTFAPYNWEQ SVPFQSSYFK PPVNRSSDVP YDPFRDSIEQ SDIGHESIRH  660
SSCGQTQDAK SVSEQNSLEL HRRLKIDTWD KNYSGNDKVV PAVEAESAAT STSDAQNKNL  720
TEEENPMVPG SVKAILKASR SINEGNSKVY NGELKGEKGR QPNELDDEES KVIRYFRAAL  780
IEFVKELMKP IWHEGRLSKD VYKVIVQKAE DKILSTLQPN QVPNSSESIK QYLSFSRPKI  840
LKLIQAYVDK YGKF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021866274.10.0protein FRIGIDA-ESSENTIAL 1-like isoform X2
TrEMBLA0A0K9S0A10.0A0A0K9S0A1_SPIOL; Uncharacterized protein
STRINGXP_010686420.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.15e-35C3H family protein