PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_009360_ufwn.t1
Common NameSOVF_009360
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family SRS
Protein Properties Length: 421aa    MW: 42011.8 Da    PI: 8.295
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_009360_ufwn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702204.82.3e-631753514153
             DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..................aeaaskrkre 77 
                        g+ +CqdCGnqakkdC+h+RCRtCC+srgfdC+thvkstWvpaa+rrerq     + +  ++ +                  +++ +k++r 
  Sp_009360_ufwn.t1 175 GNLTCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPAARRRERQMVGVVSGAAGTHGTgggsvgggggggggassgSTSGAKKPRL 266
                        6789*********************************************8877666555555557889**********99887888889998 PP

             DUF702  78 lkskkqsalsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                         +s++++++s+t++s++ ++++++tss          lP +v+ +avf+cvrv++v+dge+e+aYq+ v+i+GhvfkG+LydqG+e
  Sp_009360_ufwn.t1 267 ISSQNTATTSHTSTSNT-PPRSFDTSSshqdasfkesLPGQVRPPAVFKCVRVTAVEDGEDEFAYQAMVKIAGHVFKGFLYDQGVE 351
                        87777777777776665.677888888899******************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.7E-60176351IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.6E-26178220IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.9E-27303350IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MIFHWASXAV TAASAASLWP TSSRVGYGLP PEMGMFVVAP ATSFQHESSL MLDGPHHHHH  60
HHGHGGGGGN NAATGLGVGM GVGVIPLFNA GPCLNVAGGG GGGGGGGEGG GGGGGNLDGH  120
DSFMGRNRTG AMQLWQTQQQ QMNNYPKKSI NFDPNGLGSS FLHSPPPSSA VGCGGNLTCQ  180
DCGNQAKKDC SHRRCRTCCR SRGFDCSTHV KSTWVPAARR RERQMVGVVS GAAGTHGTGG  240
GSVGGGGGGG GGASSGSTSG AKKPRLISSQ NTATTSHTST SNTPPRSFDT SSSHQDASFK  300
ESLPGQVRPP AVFKCVRVTA VEDGEDEFAY QAMVKIAGHV FKGFLYDQGV EPRDGFPNLS  360
ELHLGGGSGG GGGSSGGGGG GRNGGGASSS SPLLDPSDVY GAAASGTGGL LGGSTYGNNI  420
N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1379385GGRNGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021843326.11e-152protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A0K9S1Y60.0A0A0K9S1Y6_SPIOL; Uncharacterized protein
STRINGXP_010673751.11e-118(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.44e-53Lateral root primordium (LRP) protein-related