![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sp_005840_iyxx.t1 | ||||||||
Common Name | SOVF_005840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 253aa MW: 25482.2 Da PI: 7.9976 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 117.4 | 5.8e-37 | 27 | 85 | 4 | 62 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + l+cprC stntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rk k+s Sp_005840_iyxx.t1 27 EPLPCPRCTSTNTKFCYYNNYNFSQPRHFCKSCRRYWTQGGTLRDIPVGGGSRKTAKRS 85 6789**************************************************98765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-27 | 2 | 83 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.4E-32 | 28 | 83 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.751 | 29 | 83 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 31 | 67 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0042545 | Biological Process | cell wall modification | ||||
GO:0045787 | Biological Process | positive regulation of cell cycle | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MPTEAAEKRA VRAQQSGALL PPVEFHEPLP CPRCTSTNTK FCYYNNYNFS QPRHFCKSCR 60 RYWTQGGTLR DIPVGGGSRK TAKRSRTCSV SSSPTSTSSA LSIGPILDHN PFSQAPVYVS 120 LSSTTAGGGG GGGGGGFTSL LSGGGGGPGL LALGGFGLGL GLDEVGFGLG RGVWAFPHHE 180 IGSYMNGVNG GCGVGGDNGG GCGGGGGGGE GGGVSRSDTW HMESGEMVGY VGGEYFTSLP 240 DLAAISTSGN GLK |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00402 | DAP | Transfer from AT3G50410 | Download |
![]() |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021835848.1 | 1e-180 | dof zinc finger protein DOF3.4 | ||||
TrEMBL | A0A0K9S2U7 | 1e-179 | A0A0K9S2U7_SPIOL; Uncharacterized protein | ||||
STRING | XP_010680466.1 | 3e-77 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G50410.1 | 1e-37 | OBF binding protein 1 |