PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_004170_asdt.t1
Common NameSOVF_004170
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 449aa    MW: 49218.9 Da    PI: 6.1108
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_004170_asdt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.6e-31241299259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY+++Hnh+
  Sp_004170_asdt.t1 241 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSDHNHP 299
                        699************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.925235301IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-31235301IPR003657WRKY domain
SuperFamilySSF1182902.75E-26238301IPR003657WRKY domain
SMARTSM007749.4E-38240300IPR003657WRKY domain
PfamPF031069.2E-26242299IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MDNNNNNNYQ GDLADIVRAS GGTTETTTTK VTTTNIGGQI PKWSFGSSNN DQYHQLKDDV  60
YSLIPTAETL LRDMDDAIAI STSSSNTFLN NFSIDHSSAT TNNNSNNNNN NNNNNNNNGV  120
CDIFPPNMVQ ISQDSNKANN IEDVKLPIQS AAGALPKNVN GAASFGFMSN QMLSNFNASC  180
SNSPKTGGFI DGANAIGGPH LQISSPRNQG IKRRKIQAKK VVCIPAPAAA NSRQTGEVVP  240
SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK GCPARKQVER SRTDPNMLVI TYTSDHNHPW  300
PTQRNALAGS TRSSQPVSKT SSKPSNNNFH NVLIKEENQN NVSTTTTTTT LPVVKEEEIR  360
LKNDGFESYR PLILAADPTT INNNEHEQQA DQDFFTDLVE FESDDPLELF STQGCKGFES  420
FTGLFDWATT TNQEENDHTT IPKCSKADI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-24217302480Disease resistance protein RRS1
5w3x_D1e-24217302480Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849390.10.0probable WRKY transcription factor 14
SwissprotO647478e-76WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLA0A0K9S3930.0A0A0K9S393_SPIOL; Uncharacterized protein
STRINGXP_010665626.11e-140(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.17e-77WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]