PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sp_003610_afga.t1 | ||||||||
Common Name | SOVF_003610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 526aa MW: 57440.2 Da PI: 8.0972 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.3 | 1.7e-29 | 209 | 267 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+v+r+ +d +++++tYeg+Hnh+ Sp_003610_afga.t1 209 HDGCHWRKYGQKIAKGNPCPRAYYRCTVSpNCPVRKQVQRCPHDMSILITTYEGTHNHP 267 7**************************999****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.9E-31 | 193 | 269 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.09E-26 | 201 | 269 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.575 | 203 | 269 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.6E-35 | 208 | 268 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.0E-26 | 210 | 267 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 526 aa Download sequence Send to blast |
MEAELSGSSI CNNDQDQLLK SAKAKMGEVK EENQKLKRLL SQILKEYQSL EKQITSMGQP 60 KQSTTETNSS SNNEDDYGVK DQDQPEMVSL TLGSWNNPCN KKQNYDKKQE SDDSLNKTRK 120 VETGGLELGL DYRNPRVSTT DSIKYSSLEN SNKVLKEDEN VDTWTSTQDL KVKENTNSRE 180 VDDQEILHQP QVKKTRVCIR SRCDSPTIHD GCHWRKYGQK IAKGNPCPRA YYRCTVSPNC 240 PVRKQVQRCP HDMSILITTY EGTHNHPLPL SATAMASATS AAASMIKSST LTSQTPTLTR 300 PGLTTSSLGL HSSNFMTTFN NNPSLISASC HNSHPTVTLD LTVPNSGFSS FDWLSSSSSY 360 SSATSSRNSS FLNFSSSAAS SSLPSLDFST SSLPTSSSWA SGYLLPYTNH HNNNTRTNNI 420 YQNPSNNNNN VQQQQQQQSL NETIAAVATK AIASNPNFQS VLAAAISSYV GNKANNDQKM 480 TSFPSSGALQ SAESSRSLAL FPTSLPALST SKNNASVAAD ARDNVG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-21 | 195 | 269 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021844620.1 | 0.0 | probable WRKY transcription factor 36 isoform X1 | ||||
Refseq | XP_021844621.1 | 0.0 | probable WRKY transcription factor 36 isoform X2 | ||||
TrEMBL | A0A0K9S2W7 | 0.0 | A0A0K9S2W7_SPIOL; Uncharacterized protein | ||||
STRING | XP_010683245.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G18860.1 | 1e-55 | WRKY DNA-binding protein 61 |