PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_003610_afga.t1
Common NameSOVF_003610
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 526aa    MW: 57440.2 Da    PI: 8.0972
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_003610_afga.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.31.7e-29209267259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r+ +d +++++tYeg+Hnh+
  Sp_003610_afga.t1 209 HDGCHWRKYGQKIAKGNPCPRAYYRCTVSpNCPVRKQVQRCPHDMSILITTYEGTHNHP 267
                        7**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-31193269IPR003657WRKY domain
SuperFamilySSF1182901.09E-26201269IPR003657WRKY domain
PROSITE profilePS5081128.575203269IPR003657WRKY domain
SMARTSM007744.6E-35208268IPR003657WRKY domain
PfamPF031066.0E-26210267IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MEAELSGSSI CNNDQDQLLK SAKAKMGEVK EENQKLKRLL SQILKEYQSL EKQITSMGQP  60
KQSTTETNSS SNNEDDYGVK DQDQPEMVSL TLGSWNNPCN KKQNYDKKQE SDDSLNKTRK  120
VETGGLELGL DYRNPRVSTT DSIKYSSLEN SNKVLKEDEN VDTWTSTQDL KVKENTNSRE  180
VDDQEILHQP QVKKTRVCIR SRCDSPTIHD GCHWRKYGQK IAKGNPCPRA YYRCTVSPNC  240
PVRKQVQRCP HDMSILITTY EGTHNHPLPL SATAMASATS AAASMIKSST LTSQTPTLTR  300
PGLTTSSLGL HSSNFMTTFN NNPSLISASC HNSHPTVTLD LTVPNSGFSS FDWLSSSSSY  360
SSATSSRNSS FLNFSSSAAS SSLPSLDFST SSLPTSSSWA SGYLLPYTNH HNNNTRTNNI  420
YQNPSNNNNN VQQQQQQQSL NETIAAVATK AIASNPNFQS VLAAAISSYV GNKANNDQKM  480
TSFPSSGALQ SAESSRSLAL FPTSLPALST SKNNASVAAD ARDNVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21195269174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844620.10.0probable WRKY transcription factor 36 isoform X1
RefseqXP_021844621.10.0probable WRKY transcription factor 36 isoform X2
TrEMBLA0A0K9S2W70.0A0A0K9S2W7_SPIOL; Uncharacterized protein
STRINGXP_010683245.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.11e-55WRKY DNA-binding protein 61