PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_003020_mejr.t1

Common Name

SOVF_003020

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

bHLH

Protein Properties

Length: 467aa MW: 51840.8 Da PI: 7.4751

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_003020_mejr.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.3e-12	405	450	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + a++L +Av+YIk+Lq Sp_003020_mejr.t1 405 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 450 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.275	399	449	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-15	402	459	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.70E-11	403	454	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.3E-15	404	460	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.9E-13	405	455	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-9	405	450	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MDSEQQQFQH HFQDFPRQFH QKQQTNTLTR FRSAPSSYFS SFLDAAADII PTTTGGASSG 60 GGGGGGGGGE RRDFPTARPL SPETENIFAS FLNNISEETN NSSSSRKLSN IPENLAVQPP 120 QFAVRVKEET DIQHQQLQQQ QHQQQQRHQP QQLQQQQHQQ QGNYSTQSQM IYHSQSKPPL 180 SNQHNTATVS SAMQNSFRTT AASSMGIDSI RHMKTGNGGG INNNSSGLTR HSSSPAGFFA 240 NLNIDTGYGM MGGMGNYGGG NIQVNYSSGQ PSSTSEVVNQ NTDIGAKRLR MNSLNERKFS 300 NSGGNNANDD NNYDFPMTSW DDSIMSENFS SLDGVADEDI KVFAELNASE NQNGDVKNRP 360 PLLSHHLSLP KTLPEMSNME KFLQFQDSVP LRIRAKRGCA THPRSIAERV RRTRISERMR 420 KLQDLVPNMD KQTNTADMLD LAVDYIKDLQ KNVENLNDNR AKCTCSR

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MDSEQQQFQH HFQDFPRQFH QKQQTNTLTR FRSAPSSYFS SFLDAAADII PTTTGGASSG  60
GGGGGGGGGE RRDFPTARPL SPETENIFAS FLNNISEETN NSSSSRKLSN IPENLAVQPP  120
QFAVRVKEET DIQHQQLQQQ QHQQQQRHQP QQLQQQQHQQ QGNYSTQSQM IYHSQSKPPL  180
SNQHNTATVS SAMQNSFRTT AASSMGIDSI RHMKTGNGGG INNNSSGLTR HSSSPAGFFA  240
NLNIDTGYGM MGGMGNYGGG NIQVNYSSGQ PSSTSEVVNQ NTDIGAKRLR MNSLNERKFS  300
NSGGNNANDD NNYDFPMTSW DDSIMSENFS SLDGVADEDI KVFAELNASE NQNGDVKNRP  360
PLLSHHLSLP KTLPEMSNME KFLQFQDSVP LRIRAKRGCA THPRSIAERV RRTRISERMR  420
KLQDLVPNMD KQTNTADMLD LAVDYIKDLQ KNVENLNDNR AKCTCSR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021863019.1	0.0	transcription factor bHLH130-like
Swissprot	Q66GR3	3e-63	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A0K9S243	0.0	A0A0K9S243_SPIOL; Uncharacterized protein
STRING	XP_010673593.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	2e-53	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]