PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_003020_mejr.t1 | ||||||||
Common Name | SOVF_003020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 467aa MW: 51840.8 Da PI: 7.4751 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.1 | 1.3e-12 | 405 | 450 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + a++L +Av+YIk+Lq Sp_003020_mejr.t1 405 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 450 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.275 | 399 | 449 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-15 | 402 | 459 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.70E-11 | 403 | 454 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.3E-15 | 404 | 460 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.9E-13 | 405 | 455 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-9 | 405 | 450 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MDSEQQQFQH HFQDFPRQFH QKQQTNTLTR FRSAPSSYFS SFLDAAADII PTTTGGASSG 60 GGGGGGGGGE RRDFPTARPL SPETENIFAS FLNNISEETN NSSSSRKLSN IPENLAVQPP 120 QFAVRVKEET DIQHQQLQQQ QHQQQQRHQP QQLQQQQHQQ QGNYSTQSQM IYHSQSKPPL 180 SNQHNTATVS SAMQNSFRTT AASSMGIDSI RHMKTGNGGG INNNSSGLTR HSSSPAGFFA 240 NLNIDTGYGM MGGMGNYGGG NIQVNYSSGQ PSSTSEVVNQ NTDIGAKRLR MNSLNERKFS 300 NSGGNNANDD NNYDFPMTSW DDSIMSENFS SLDGVADEDI KVFAELNASE NQNGDVKNRP 360 PLLSHHLSLP KTLPEMSNME KFLQFQDSVP LRIRAKRGCA THPRSIAERV RRTRISERMR 420 KLQDLVPNMD KQTNTADMLD LAVDYIKDLQ KNVENLNDNR AKCTCSR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021863019.1 | 0.0 | transcription factor bHLH130-like | ||||
Swissprot | Q66GR3 | 3e-63 | BH130_ARATH; Transcription factor bHLH130 | ||||
TrEMBL | A0A0K9S243 | 0.0 | A0A0K9S243_SPIOL; Uncharacterized protein | ||||
STRING | XP_010673593.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 2e-53 | bHLH family protein |
Publications ? help Back to Top | |||
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