PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_002270_yfxi.t2
Common NameSOVF_002270
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 435aa    MW: 47969.4 Da    PI: 5.7991
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_002270_yfxi.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-184186147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       rg+W++eEd +l ++v ++G ++W++Iar ++ gR++k+c++rw + 
  Sp_002270_yfxi.t2 41 RGPWSPEEDAILSELVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 86
                       89******************************.***********985 PP
2Myb_DNA-binding45.32e-14104142747
                        HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        eEd++++ a++ +G++ W+ Ia+ ++ gRt++ +k++w++ 
  Sp_002270_yfxi.t2 104 EEDQIIISAHATHGNK-WACIAKLLP-GRTDNAIKNHWNST 142
                        9***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.2133691IPR017930Myb domain
SuperFamilySSF466897.86E-2939139IPR009057Homeodomain-like
SMARTSM007174.1E-164089IPR001005SANT/Myb domain
PfamPF002491.1E-174186IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-224290IPR009057Homeodomain-like
CDDcd001673.65E-154385No hitNo description
Gene3DG3DSA:1.10.10.603.4E-2091146IPR009057Homeodomain-like
SMARTSM007179.9E-1092145IPR001005SANT/Myb domain
PROSITE profilePS5129418.44993147IPR017930Myb domain
PfamPF002491.1E-12104142IPR001005SANT/Myb domain
CDDcd001673.82E-10104143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MSDQPMTTED PNDLTLPDAA TATATAESDR TPAAPSGSRV RGPWSPEEDA ILSELVSKFG  60
ARNWSLIARG IPGRSGKSCR LRWCNQLDPC VKRKPFSGQV SLXEEDQIII SAHATHGNKW  120
ACIAKLLPGR TDNAIKNHWN STLRRRYDFG KSVGDTSYEK NKASSEETVS GETDSFKAYD  180
GRQDVNMVVN QYIQSDYQSP VNENQPMQPE NQPSIPFENH LVVPYHPIVA YPPIVAYPPV  240
VAHFVEPTEP HTLSRPVARV GAFNVYQPSS NNFTPAAPIH KPVPVKGPLV NAFQPDFGIS  300
KFLDGVECEP IIPLRCGHGC CSTPANVKSR SSLLGPEFIE YDDPPSFSSH ELASIATDLN  360
NIAWIKSGLD STCTRRMEDP IQRRDSHETD NSEQSAQTSN MRFDEGRSKL MGMMTEVFST  420
QIPRQTVSLP AEVGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-38401486109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845662.10.0transcription factor MYB25-like
TrEMBLA0A0K9S3S00.0A0A0K9S3S0_SPIOL; Uncharacterized protein
STRINGXP_010690407.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-99myb domain protein 109