PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_002270_yfxi.t1
Common NameSOVF_002270
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 430aa    MW: 47495.1 Da    PI: 5.6205
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_002270_yfxi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-184186147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       rg+W++eEd +l ++v ++G ++W++Iar ++ gR++k+c++rw + 
  Sp_002270_yfxi.t1 41 RGPWSPEEDAILSELVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 86
                       89******************************.***********985 PP
2Myb_DNA-binding53.65.1e-1793137147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        r+++++eEd++++ a++ +G++ W+ Ia+ ++ gRt++ +k++w++ 
  Sp_002270_yfxi.t1  93 RKPFSEEEDQIIISAHATHGNK-WACIAKLLP-GRTDNAIKNHWNST 137
                        789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.2133691IPR017930Myb domain
SuperFamilySSF466892.53E-3139134IPR009057Homeodomain-like
SMARTSM007174.1E-164089IPR001005SANT/Myb domain
PfamPF002491.1E-174186IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-264294IPR009057Homeodomain-like
CDDcd001673.54E-154385No hitNo description
PROSITE profilePS5129421.81292142IPR017930Myb domain
SMARTSM007178.0E-1692140IPR001005SANT/Myb domain
PfamPF002491.8E-1593137IPR001005SANT/Myb domain
CDDcd001674.39E-1295138No hitNo description
Gene3DG3DSA:1.10.10.605.7E-2495141IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MSDQPMTTED PNDLTLPDAA TATATAESDR TPAAPSGSRV RGPWSPEEDA ILSELVSKFG  60
ARNWSLIARG IPGRSGKSCR LRWCNQLDPC VKRKPFSEEE DQIIISAHAT HGNKWACIAK  120
LLPGRTDNAI KNHWNSTLRR RYDFGKSVGD TSYEKNKASS EETVSGETDS FKAYDGRQDV  180
NMVVNQYIQS DYQSPVNENQ PMQPENQPSI PFENHLVVPY HPIVAYPPIV AYPPVVAHFV  240
EPTEPHTLSR PVARVGAFNV YQPSSNNFTP AAPIHKPVPV KGPLVNAFQP DFGISKFLDG  300
VECEPIIPLR CGHGCCSTPA NVKSRSSLLG PEFIEYDDPP SFSSHELASI ATDLNNIAWI  360
KSGLDSTCTR RMEDPIQRRD SHETDNSEQS AQTSNMRFDE GRSKLMGMMT EVFSTQIPRQ  420
TVSLPAEVGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-41401436109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845662.10.0transcription factor MYB25-like
TrEMBLA0A0K9S3S00.0A0A0K9S3S0_SPIOL; Uncharacterized protein
STRINGXP_010690407.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-102myb domain protein 109