PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_000340_siic.t1
Common NameSOVF_000340
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 890aa    MW: 100999 Da    PI: 6.2547
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_000340_siic.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.7e-14713759455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Sp_000340_siic.t1 713 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 759
                        7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF530984.32E-5614107IPR012337Ribonuclease H-like domain
SuperFamilySSF530984.32E-56135389IPR012337Ribonuclease H-like domain
PfamPF143723.3E-22164267IPR025525hAT-like transposase, RNase-H fold
PfamPF056992.6E-23315395IPR008906HAT, C-terminal dimerisation domain
PROSITE profilePS5088817.625709758IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-18711770IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-18713769IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-11713758IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.72E-14713763No hitNo description
SMARTSM003531.2E-17715764IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    Send to blast
MMQRKSTCIG NGDYLHMRCV AHIINLIVWD GLKNNKKSID KVRYAVKFVK SSPSRLKLFK  60
DLAEKYVRSQ LSPSLDVPTR WNSTFDMLDR ALKFRDIFWR MDIPTNPQLD SDLEAVLAGD  120
DNEDPIELQF EMENAGAPSE NDWKVCEGFA LFLKEFKTLN EQVSGSLYVT SNSTFFYIAR  180
VLDQLNKWMA SDNIDFMRMA TTMKKKFDKY WGQLEKMNVL IYMGAILDPK VKLVGLNLVF  240
DRMYGKTKGE ELGEAVHNKA CKLFDDYRRI YAPFSPSNDE VTSASSSHST SFDHKKVIEE  300
QVKRLRTANR YSSSEFDRYL NEKLREHELD MDILDWWKMN AHRYPILARL ARDVLAVPIS  360
TVASESAFSA GGRHLDQFRS SLTTKIQEDP SFIEQVRYYF DDHYYNQQLQ NGPPLQSKPA  420
LSEHSTSNPT ASNHSHFQSP LAPATVNPPP VPSDGPNDNN DDEETEGEAD SDPEANTTLV  480
LPLKLDLCYQ KGLTVIPDSS DEPSELMQIE MPEDIRLSSP DVVSNNLDSN FPLVAAADTP  540
ASHQHHPVDS FIATKSTRRW PVMQQQQQQQ QQQLQDPIIF SNLLQPPPPG FTTMENLSQE  600
DTHYSQTVSI ILQLQSSRWA ESSTTTSIPT SSSYLSYSSN SVFSSWRPRS NLHHLPMEGT  660
SQCLLKNILL TVPLLHSKYR EENISSPKSD PQYGILARGK GSSSVPHDEL SANHVLAERR  720
RREKLNERFI ILRSLVPFVT KMDKASILGD TIEYVKQLRK KIQELEGCTK SGDERYKRKV  780
QVVEESSSVS EIRAKKTVAQ SQQSNMLEVS IIESDALVEL QCPYKEGLLL DVMITLRDMC  840
LEVTTVLSSL NNGLLAAELR AKVKENVNGK KPSIIEVKRA VNQKVPQSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-14713762857Transcription factor MYC2
5gnj_B3e-14713762857Transcription factor MYC2
5gnj_E3e-14713762857Transcription factor MYC2
5gnj_F3e-14713762857Transcription factor MYC2
5gnj_G3e-14713762857Transcription factor MYC2
5gnj_I3e-14713762857Transcription factor MYC2
5gnj_M3e-14713762857Transcription factor MYC2
5gnj_N3e-14713762857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1717722ERRRRE
2718723RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021866401.10.0basic helix-loop-helix protein A-like
SwissprotE3SXU41e-111BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A0K9S3230.0A0A0K9S323_SPIOL; Uncharacterized protein
STRINGXP_010684257.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.13e-45bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]