PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g089190.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 89aa    MW: 10293.6 Da    PI: 9.1198
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g089190.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.91.5e-10347345
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                        +WT+   +++ +a +++ ++   +W+ Iar++g g++++++k ++ 
  Sopim12g089190.0.1  3 NWTKNQNKKFEEALALFDKDtpdRWHNIARCVG-GKSAEEVKRHYE 47
                        7********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.4E-6152IPR001005SANT/Myb domain
PROSITE profilePS5129312.152154IPR017884SANT domain
Gene3DG3DSA:1.10.10.601.3E-5256IPR009057Homeodomain-like
SuperFamilySSF466892.37E-13357IPR009057Homeodomain-like
CDDcd001673.30E-7350No hitNo description
PfamPF002491.4E-7347IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MANWTKNQNK KFEEALALFD KDTPDRWHNI ARCVGGKSAE EVKRHYELLV KDVMQIENDQ  60
VPLPNYRGAS SNGRSYSNEQ RLMQNLRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-284881192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755241e-133HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060852.12e-61protein RADIALIS-like 3
RefseqXP_019067007.12e-61protein RADIALIS-like 3
SwissprotQ1A1731e-34RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLK4DGZ05e-60K4DGZ0_SOLLC; Uncharacterized protein
STRINGSolyc12g089190.1.18e-61(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.25e-37RAD-like 6