PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g087850.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 163aa    MW: 18383.1 Da    PI: 7.9296
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g087850.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.93.2e-071262255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        r+ h ++ r+ R+++N+ +  L++l+ ++   + ++ + a+i   A++++k+L+
  Sopim12g087850.0.1 12 RMIHIAMKRNQRKQMNNYLTLLQSLISSS---HVQRADQASIIGGAINFVKELE 62
                        78899************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.33E-6866No hitNo description
Gene3DG3DSA:4.10.280.103.3E-8966IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-11974IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.8141061IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-41262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-51667IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MLHEEKENKD ERMIHIAMKR NQRKQMNNYL TLLQSLISSS HVQRADQASI IGGAINFVKE  60
LEHNLQTLRS NCSSELSRGS CQPQILTKRR PKQLMNIVVG LQCLWLTILH LNVTTIHNQI  120
VLCSISAKLE EGCQLTTIEE ISHAVNQLLG RIQEEEATSS SN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755241e-93HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360298.13e-75PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T46e-43BH096_ARATH; Transcription factor bHLH96
SwissprotQ9SK915e-43BH094_ARATH; Transcription factor bHLH94
TrEMBLM1BI927e-74M1BI92_SOLTU; Uncharacterized protein
STRINGSolyc12g087850.1.11e-113(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2114522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.12e-45bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]