|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sopim12g056460.0.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
Family |
MIKC_MADS |
Protein Properties |
Length: 207aa MW: 23968.4 Da PI: 6.5678 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim12g056460.0.1 | genome | CSHL | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 91.1 | 5.4e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++ rqvtfskRr g+lKKA+ELSvLCdaev++iifs++gkl+e+ss
Sopim12g056460.0.1 9 KRIENTTSRQVTFSKRRGGLLKKAFELSVLCDAEVSLIIFSQKGKLFEFSS 59
79***********************************************96 PP
|
2 | K-box | 69.4 | 1.2e-23 | 82 | 172 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
l e+++e+l+ e+ + +++e L+ ++R+llGedLes+s+ eL+++e qL++sl++iR+kKn+l++eqi+ l+ ek l ++n +Lr+k+e
Sopim12g056460.0.1 82 LLEQTTEHLKGEVMSMTRNLEVLEISKRRLLGEDLESCSIDELEKVEGQLDQSLRNIRAKKNQLFKEQISLLKDEEKVLMNKNAELREKYE 172
77899***********************************************************************************987 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 207 aa
Download sequence Send
to blast |
MVRGITEMKR IENTTSRQVT FSKRRGGLLK KAFELSVLCD AEVSLIIFSQ KGKLFEFSSS 60 STNKTIERYQ KNDKNLGHEN ILLEQTTEHL KGEVMSMTRN LEVLEISKRR LLGEDLESCS 120 IDELEKVEGQ LDQSLRNIRA KKNQLFKEQI SLLKDEEKVL MNKNAELREK YEARSLPLFI 180 DRREDESPQT QNMEVDTQLF IGLPER*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | HG975524 | 1e-96 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Publications
? help Back to Top |
- Thomson MJ,Edwards JD,Septiningsih EM,Harrington SE,McCouch SR
Substitution mapping of dth1.1, a flowering-time quantitative trait locus (QTL) associated with transgressive variation in rice, reveals multiple sub-QTL. Genetics, 2006. 172(4): p. 2501-14 [PMID:16452146] - Park SJ, et al.
Rice Indeterminate 1 (OsId1) is necessary for the expression of Ehd1 (Early heading date 1) regardless of photoperiod. Plant J., 2008. 56(6): p. 1018-29 [PMID:18774969] - Lee S,Jeong DH,An G
A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses. Plant Signal Behav, 2008. 3(7): p. 471-4 [PMID:19704489] - Maas LF,McClung A,McCouch S
Dissection of a QTL reveals an adaptive, interacting gene complex associated with transgressive variation for flowering time in rice. Theor. Appl. Genet., 2010. 120(5): p. 895-908 [PMID:19949767] - Sun C, et al.
The histone methyltransferase SDG724 mediates H3K36me2/3 deposition at MADS50 and RFT1 and promotes flowering in rice. Plant Cell, 2012. 24(8): p. 3235-47 [PMID:22892321] - Choi SC, et al.
Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3. Plant Physiol., 2014. 164(3): p. 1326-37 [PMID:24420930] - Núñez-López L,Aguirre-Cruz A,Barrera-Figueroa BE,Peña-Castro JM
Improvement of enzymatic saccharification yield in Arabidopsis thaliana by ectopic expression of the rice SUB1A-1 transcription factor. PeerJ, 2015. 3: p. e817 [PMID:25780769] - Jin J, et al.
MORF-RELATED GENE702, a Reader Protein of Trimethylated Histone H3 Lysine 4 and Histone H3 Lysine 36, Is Involved in Brassinosteroid-Regulated Growth and Flowering Time Control in Rice. Plant Physiol., 2015. 168(4): p. 1275-85 [PMID:25855537] - Liu X, et al.
Brassinosteroid (BR) biosynthetic gene lhdd10 controls late heading and plant height in rice (Oryza sativa L.). Plant Cell Rep., 2016. 35(2): p. 357-68 [PMID:26518431] - Hwang YH, et al.
Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] - Shibaya T, et al.
Hd18, Encoding Histone Acetylase Related to Arabidopsis FLOWERING LOCUS D, is Involved in the Control of Flowering Time in Rice. Plant Cell Physiol., 2016. 57(9): p. 1828-38 [PMID:27318280] - Alter P, et al.
Flowering Time-Regulated Genes in Maize Include the Transcription Factor ZmMADS1. Plant Physiol., 2016. 172(1): p. 389-404 [PMID:27457125]
|