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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim12g049560.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
ERF |
Protein Properties |
Length: 387aa MW: 42701.2 Da PI: 4.7375 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim12g049560.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 59.1 | 1.1e-18 | 119 | 168 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
+y+G+r ++ +g+W+AeIrdp + r+++g+f taeeAa+a++a +++++g
Sopim12g049560.0.1 119 QYRGIRKRP-WGKWAAEIRDPQ----KgVRVWIGTFNTAEEAARAYDAEARRIRG 168
69*******.**********94....35*************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 387 aa
Download sequence Send
to blast |
MCGGAIISDW IPPSRSSSRL TADQLWGCAD LQNKKRNKKK RNPSNYHSKR LRSENVDFEA 60 DFQDFKDFSD DEEAYSLDIK PFAFSASELS GTSAGSESLI SVDANKEVEK SAKRQRKNQY 120 RGIRKRPWGK WAAEIRDPQK GVRVWIGTFN TAEEAARAYD AEARRIRGNK AKVNFPDEAS 180 VPASRQAGKV NPRKVLSDES SNPVPPNTML MNNLNSGYCD NVGLLEEKTK TLNGYEALCV 240 TPVDTGPNPY PHPAAAGVYF NSDQGSNSFG PSDFWGETCS RTPDISSVLS AAIECDEAQF 300 IEGVDLEEKP KSCTNNLVPN NVNTEHKPPE VFSTFESQLK FYQTPYSEGN MDVPVDAFLD 360 ADATQGVENA MDLWSFDELS SLMGGI*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 112 | 126 | KRQRKNQYRGIRKRP |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT013435 | 0.0 | BT013435.1 Lycopersicon esculentum clone 132076R, mRNA sequence. |