PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim12g044610.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 376aa MW: 40228.9 Da PI: 7.2337 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.7 | 5.5e-13 | 118 | 162 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++lG+g+W+ I+r + + Rt+ q+ s+ qky Sopim12g044610.0.1 118 PWTEEEHRLFLIGLQKLGKGDWRGISRNFVTSRTPTQVASHAQKY 162 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.515 | 3 | 19 | IPR001878 | Zinc finger, CCHC-type |
Gene3D | G3DSA:4.10.60.10 | 5.4E-4 | 3 | 22 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 18.705 | 111 | 167 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-17 | 113 | 168 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.4E-18 | 114 | 166 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.1E-9 | 115 | 165 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-11 | 116 | 161 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.89E-9 | 118 | 163 | No hit | No description |
Pfam | PF00249 | 3.1E-10 | 118 | 162 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MTRRCSHCNN NGHNSRTCPT RGGVTGGVGG GSSGGGGVRL FGVRLTDGSI MKKSASMGNL 60 SSLHYHSSSS AAASPNPGSP SSDVLRESVH LTDGYLSDDP AHASSSANHR IERKKGIPWT 120 EEEHRLFLIG LQKLGKGDWR GISRNFVTSR TPTQVASHAQ KYFIRQSNAT RRKRRSSLFD 180 IVADTAADAS HPLPEEQFML PPRAMESDKE QLAPSATKAI ETDFADSLPS LDLSLKSNFE 240 SMETAPSEPV EETKPNTTIS EIPSGFPAFF PAYIPVPYPF WPSSAFPVPE DRGAEASHHQ 300 ILKPIPSVPK EPVNVDELVG MSQLTLADAG SGHIEPSPLS LKLTAEPSRQ SAFHASTPVK 360 SSEITKGETA PIQAI* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975524 | 0.0 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004252360.1 | 0.0 | transcription factor MYBS3 | ||||
TrEMBL | A0A3Q7JA32 | 0.0 | A0A3Q7JA32_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g044610.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11770 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16350.1 | 9e-91 | MYB_related family protein |